PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12983
Common NameKK1_013384
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 189aa    MW: 21193.5 Da    PI: 6.8658
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12983genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-053557123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C + F++   L  H+++H
  C.cajan_12983 35 YTCTFCRREFRSAQALGGHMNVH 57
                   9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.73E-63262No hitNo description
Gene3DG3DSA:3.30.160.606.7E-43360IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1573562IPR007087Zinc finger, C2H2
SMARTSM003550.00663557IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-53558IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MWNPREEEED DSWEVRAFAE DTRNVMGTTW PPRSYTCTFC RREFRSAQAL GGHMNVHRRD  60
RARLHQPPPS SFINIPPQEL VANAGLCLLY HLPTSPNTST ITNTNNTNTS TSSSTCAPFP  120
PPTTSPSTLL SISPNNFLMQ TSFNFPSTRI NTSFCSSSTK LQQPSTSSSI HDNTHLEEID  180
LELRLGHKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-133057229superman protein
2l1o_A1e-133057229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_12983
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0384854e-69HM038485.1 Glycine max PALMATE-LIKE PENTAFOLIATA1 (PALM1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020218312.11e-136zinc finger protein 10
TrEMBLA0A151TJ281e-135A0A151TJ28_CAJCA; Putative transcriptional regulator RABBIT EARS
STRINGAES944391e-67(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-32C2H2 family protein