PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12992
Common NameKK1_013393
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 335aa    MW: 37533.3 Da    PI: 6.1793
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12992genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.5e-12164211355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    + h ++Er+RR+++ ++f  L  +lP +     kK++Ka++L  A++Y+k+Lq
  C.cajan_12992 164 QEHVIAERKRREKLSQRFIALSAILPGL-----KKMDKASVLGDAIKYVKQLQ 211
                    6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.542161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10164211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16165222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-16165225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.74E-13166215No hitNo description
SMARTSM003534.3E-15167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
LEYPTFFDQY PMDSFACPPL DDFDFESFSG SPESNSSYQF NSESTPNCFP VESLDQSYSP  60
ARPITKRLKK FSTLNTTCAG DLTPHKVSAS PYSQLISFGH FNAPSGAPKQ FDNYVKPKIE  120
NTYSENMDFS AFVSQGSYED KSFLSSDNLT NQPVITTRNP IQAQEHVIAE RKRREKLSQR  180
FIALSAILPG LKKMDKASVL GDAIKYVKQL QERVQTLEEQ AAKRTVGSSV LVKRSILFAD  240
DDDSDSHFDH SLPEIEVRVS GKDVLIRTQS DKHSGLAAVI LSELEKLHFM VQSSSFLPFG  300
NNKIDVTIIA QMNKEKCMTA KDLLGRLREA LSQLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13166220963Transcription factor MYC2
5gnj_B2e-13166220963Transcription factor MYC2
5gnj_E2e-13166220963Transcription factor MYC2
5gnj_F2e-13166220963Transcription factor MYC2
5gnj_G2e-13166220963Transcription factor MYC2
5gnj_I2e-13166220963Transcription factor MYC2
5gnj_M2e-13166220963Transcription factor MYC2
5gnj_N2e-13166220963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174ERKRRE
2170175RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_12992
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217690.10.0transcription factor bHLH25
TrEMBLA0A151TJ690.0A0A151TJ69_CAJCA; Transcription factor bHLH25 (Fragment)
STRINGGLYMA11G04690.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-54bHLH family protein