PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_13058
Common NameKK1_013462
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HD-ZIP
Protein Properties Length: 227aa    MW: 25673.9 Da    PI: 8.299
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_13058genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-1870124256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  C.cajan_13058  70 RKKLRLSKDQSIILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 124
                    778899***********************************************98 PP
2HD-ZIP_I/II129.11.8e-4170159191
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    +kk+rlsk+q+ +LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  C.cajan_13058  70 RKKLRLSKDQSIILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 159
                    69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046184.2E-18244IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466891.0E-1860127IPR009057Homeodomain-like
PROSITE profilePS5007117.24866126IPR001356Homeobox domain
SMARTSM003891.0E-1568130IPR001356Homeobox domain
PfamPF000465.5E-1670124IPR001356Homeobox domain
CDDcd000862.37E-1570127No hitNo description
Gene3DG3DSA:1.10.10.601.1E-1775124IPR009057Homeodomain-like
PRINTSPR000311.3E-597106IPR000047Helix-turn-helix motif
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5106122IPR000047Helix-turn-helix motif
PfamPF021831.5E-11126160IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.6E-27126169IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
EAGSFLRGID VNRLPSAVDC EDEAGVSSPN STVSSVSGKR SERDPNGEDQ DTDRACSRGI  60
SDEEEAETTR KKLRLSKDQS IILEESFKEH NTLNPKQKLA LAKQLGLRPR QVEVWFQNRR  120
ARTKLKQTEV DCEFLKRCCE NLTEENRRLQ KEVQELRALK LSPQFYMHMT PPTTLTMCPS  180
CERVAVPPSA VDSVSATRHH HVPRAFPLGP WASSVPHRPF DALRPRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16874TRKKLRL
2118126RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_13058
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217258.11e-168homeobox-leucine zipper protein HAT4
SwissprotP466011e-100HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A151TJE21e-166A0A151TJE2_CAJCA; Homeobox-leucine zipper protein HAT2 (Fragment)
STRINGGLYMA01G41581.11e-142(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.13e-87homeobox protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]