PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_13066
Common NameKK1_013470
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 184aa    MW: 21141.9 Da    PI: 9.0033
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_13066genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.86.9e-201663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd++l+++++ +G ++Wkt+a + g++R++k+c++rw++yl
    C.cajan_13066 16 RGAWTSEEDQKLAQCIEIHGAKRWKTVAIKSGLNRCGKSCRLRWLNYL 63
                     89********************************************97 PP
2Myb_DNA-binding543.8e-1769113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + eE++l+++++k+lG++ W++Ia++++ gRt++++k++w++ 
    C.cajan_13066  69 RGNISVEEEDLIIRLHKLLGNR-WSLIAKRLP-GRTDNEIKNYWNTC 113
                      78999*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.3311163IPR017930Myb domain
SuperFamilySSF466899.17E-3015110IPR009057Homeodomain-like
SMARTSM007171.8E-151565IPR001005SANT/Myb domain
PfamPF002491.5E-171663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-231770IPR009057Homeodomain-like
CDDcd001671.07E-101863No hitNo description
PROSITE profilePS5129425.51564118IPR017930Myb domain
SMARTSM007179.4E-1568116IPR001005SANT/Myb domain
PfamPF002491.0E-1569113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2571118IPR009057Homeodomain-like
CDDcd001672.20E-1173112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MATHKNDETA KKTNNRGAWT SEEDQKLAQC IEIHGAKRWK TVAIKSGLNR CGKSCRLRWL  60
NYLRPNIKRG NISVEEEDLI IRLHKLLGNR WSLIAKRLPG RTDNEIKNYW NTCLCKKVNH  120
TKVKAETSMA QPTHSTQNNT EERAVVENKE ANDGSGDSEV NFDVNEFFNF SMEGLYALDW  180
MISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-301511826128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_13066
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-65AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020216908.11e-136anthocyanin regulatory C1 protein
SwissprotP102908e-51MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A151TJB31e-134A0A151TJB3_CAJCA; Anthocyanin regulatory C1 protein
STRINGGLYMA01G41610.21e-116(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40330.11e-50myb domain protein 23
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]