PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_13406
Common NameKK1_013818
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NF-YA
Protein Properties Length: 310aa    MW: 34438.8 Da    PI: 9.2434
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_13406genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA95.55.8e-30184240158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    +ep+YVN+KQy++Il+RRq Rakle+++k   k rkpylheSRh hA++R+Rg gGrF
  C.cajan_13406 184 EEPIYVNSKQYHAILRRRQYRAKLEAHSKP-LKDRKPYLHESRHLHAIKRARGAGGRF 240
                    69***************************9.9*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.8E-34182243IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.946183243IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.8E-25185240IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.2E-23186208IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860188208IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.2E-23217240IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MNCLCEKDSA LFSSHSTSPF VPGCPAWGAS ESEVKQSSMS TSLSFKVDVM LMPPQHHKSK  60
TPSFQFQEQD SSSTQSTDQS YPEVGSAQSG QISVYHSSIG STLGSTGEKS MGCAIRSFMG  120
SQDFTFPPPQ LNHSQSLAHL AFHYADSCYT GQMAAAYGPK SKIPHVQPVE PAPVRIPLPL  180
DVTEEPIYVN SKQYHAILRR RQYRAKLEAH SKPLKDRKPY LHESRHLHAI KRARGAGGRF  240
LNTKKLQQSK LTSANHCLTR MNLSAESKMH QMEQNYMNGA DHVTYAARDM KNYTADKDGG  300
TTQHHLSVYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-20184244262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_13406
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020224510.10.0nuclear transcription factor Y subunit A-3
TrEMBLA0A151SUF10.0A0A151SUF1_CAJCA; Nuclear transcription factor Y subunit A-3
STRINGXP_007150480.11e-123(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-45nuclear factor Y, subunit A3