PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_13749
Common NameKK1_014171
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 325aa    MW: 36420.8 Da    PI: 6.6212
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_13749genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed+ll ++++ +G+g+W+t ++  g+ R++k+c++rw +yl
    C.cajan_13749 15 KGPWTPQEDLLLTNYIQTHGPGNWRTLPKNAGLQRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding53.74.7e-1768112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
    C.cajan_13749  68 RGRFSFEEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 112
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-23865IPR009057Homeodomain-like
PROSITE profilePS5129416.7051062IPR017930Myb domain
SuperFamilySSF466891.76E-3012109IPR009057Homeodomain-like
SMARTSM007173.6E-131464IPR001005SANT/Myb domain
PfamPF002491.9E-151562IPR001005SANT/Myb domain
CDDcd001675.03E-111762No hitNo description
PROSITE profilePS5129425.13763117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2666117IPR009057Homeodomain-like
SMARTSM007174.8E-1667115IPR001005SANT/Myb domain
PfamPF002491.9E-1568112IPR001005SANT/Myb domain
CDDcd001673.87E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGRAPCCDKT NSLKKGPWTP QEDLLLTNYI QTHGPGNWRT LPKNAGLQRC GKSCRLRWTN  60
YLRPDIKRGR FSFEEEETII QLHSVLGNKW SAIAARLPGR TDNEIKNYWN THIRKRLLRM  120
GIDPVTHTPR LDLLDMSSIL RSAIGNVNPS FLNLQGLLGA QALMNVNPEF LKLAATATLL  180
SLKNENPSNF VTQQLNSGNC QVQSQVAPSD QFHTPTQSNN VNVNGLSSSP ENSTPSNYLG  240
ENNYLIAQQN QVDNLLHDPE LMHYLNNANQ NMGYESVLST PLSTPTPLNS SSTYVNSSTE  300
EERDTYCSDV FKLEIPESLD ISDYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-28131172105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-28131172105C-Myb DNA-Binding Domain
1msf_C1e-28131172105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_13749
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150402e-81AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020224630.10.0transcription factor MYB102
SwissprotQ9LDR82e-96MY102_ARATH; Transcription factor MYB102
TrEMBLA0A151SVB40.0A0A151SVB4_CAJCA; Transcription factor MYB39
STRINGXP_007149908.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85034127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.17e-91MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]