PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_13805
Common NameKK1_014228
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 331aa    MW: 37620.6 Da    PI: 6.6309
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_13805genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-08104125426
                    ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    + C+ f+r G C++Gd C F+Hg
  C.cajan_13805 104 SVCPEFRR-GNCSRGDACEFSHG 125
                    68******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.9E-5100126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.291101127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-5104126IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6104125IPR000571Zinc finger, CCCH-type
SMARTSM003562.4135158IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.287135159IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSSVCPEHKF QLQLLSLEKY NRDNDTPPRK LLTQRATVYD GGHYDYDSDD DSGDPYASDE  60
FRMYEFKVRL CMRSRSHDWT DCPFQHPGEK ARRRDPRRYH YSGSVCPEFR RGNCSRGDAC  120
EFSHGVFESW LHPDRYRTEA CKDGKNCKRK VCFFAHTPRQ LRVLPLDNDN NIRNQKCSIM  180
TPHSNNNNNH GCLFCQCSSS TCSPTSTLFG VSHFSPTLSP SSPSSPTRFE TDDPHESVVK  240
DVLYDIVSSM DGLNFGEASP VSASKPRNLS WLNVSELDVS ENQQQFIFSP TITAGGRFSN  300
NGNGRYLREE SGVVADDVIA PDLAWVNDLL R
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_13805
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020224103.10.0zinc finger CCCH domain-containing protein 61
SwissprotQ9ZWA19e-74C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A151SVJ40.0A0A151SVJ4_CAJCA; Zinc finger CCCH domain-containing protein 2
STRINGXP_007132795.11e-136(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44260.12e-64C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]