PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_13823
Common NameKK1_014246
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 316aa    MW: 35498.9 Da    PI: 8.3379
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_13823genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.57.2e-191360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+d+++++G g W+t ++  g++R++k+c++rw +yl
    C.cajan_13823 13 KGPWTPEEDHKLIDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYL 60
                     79********************************************97 PP
2Myb_DNA-binding54.33.2e-1766110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  lG++ W+tIa+ ++ gRt++++k++w+++
    C.cajan_13823  66 RGRFSFEEEEAIIQLHSVLGNK-WSTIAANLP-GRTDNEIKNYWNTH 110
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-25663IPR009057Homeodomain-like
PROSITE profilePS5129418.806860IPR017930Myb domain
SuperFamilySSF466893.01E-3110107IPR009057Homeodomain-like
SMARTSM007177.9E-141262IPR001005SANT/Myb domain
PfamPF002495.9E-171360IPR001005SANT/Myb domain
CDDcd001673.40E-111560No hitNo description
PROSITE profilePS5129426.1261115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2664116IPR009057Homeodomain-like
SMARTSM007173.4E-1665113IPR001005SANT/Myb domain
PfamPF002498.6E-1566110IPR001005SANT/Myb domain
CDDcd001677.30E-1268111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MTKSPSEKNG LKKGPWTPEE DHKLIDYIQK HGHGKWRTLP KNAGLKRCGK SCRLRWANYL  60
RPDIKRGRFS FEEEEAIIQL HSVLGNKWST IAANLPGRTD NEIKNYWNTH IKKKLIKMGI  120
DPVTHTPRLD VLQLASFLSS SINPDVTLNH INNNNQLSGS PLPQCSQTMQ HDSIQTFQPN  180
QLQENHIAYK TNPMEAKLEH QISPIATSFS HQSTLPNLWY DHIIDLPQAQ SSSAMQCFSS  240
SPKLNTFVLE NQIEGMPNFN LSSLLSSTPS SSSPSTLNSS SSTTFVNGTT EDERDTYGSN  300
MLMYNISNGL NDSGFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30111155108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_13823
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312011e-177KT031201.1 Glycine max clone HN_CCL_73 MYB/HD-like transcription factor (Glyma12g34650.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020224113.10.0transcription factor MYB41
SwissprotQ9LDR83e-86MY102_ARATH; Transcription factor MYB102
TrEMBLA0A151SVK20.0A0A151SVK2_CAJCA; Transcription factor MYB39
STRINGGLYMA12G34650.21e-148(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151201013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-86MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]