PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_14600
Common NameKK1_015030
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 103aa    MW: 11822.9 Da    PI: 9.9563
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_14600genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.6e-11326226
                   -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                   ktelCr+f + G C +G++C++aH+
  C.cajan_14600  3 KTELCRRFKK-GACAHGSKCNYAHS 26
                   8*********.*************8 PP
2zf-CCCH22.71.8e-073757626
                   -SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                   Cr f+++ +C+yG +C+++H+
  C.cajan_14600 37 CRLFLQNKHCPYGRTCRYIHS 57
                   9*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.291128IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-7232IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-9326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-12332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3573159IPR000571Zinc finger, CCCH-type
SMARTSM003560.00673158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-73259IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-73358IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-53757IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MAKTELCRRF KKGACAHGSK CNYAHSTAEL RRQPKFCRLF LQNKHCPYGR TCRYIHSTSA  60
TPFPGTTFLS SLNSILIIFL NPIYLSNYPY PFPPPCMLSI HLH
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_14600
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020223577.11e-41mRNA decay activator protein ZFP36L2
TrEMBLA0A151SXS32e-69A0A151SXS3_CAJCA; Putative zinc finger CCCH domain-containing protein 21
STRINGXP_007150718.14e-29(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1595477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.21e-10C3H family protein