PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_14854

Common Name

KK1_015288

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NAC

Protein Properties

Length: 215aa MW: 24388.9 Da PI: 9.296

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_14854	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.9	2e-49	13	139	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 ppGfrFh +deel+v+yL++k+++++l++ ++i+e+d+yk++Pw+Lp+k +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++ls+ + C.cajan_14854 13 PPGFRFHLSDEELIVHYLQNKISSRPLPA-SIIAEIDLYKYNPWELPNKSLFGEEEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKPILSSsG 107 9**************************.89***********8777899**********************************9977 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g+kk Lvfy+gr p+g+k+dW+m+eyrl C.cajan_14854 108 SKRIGVKKALVFYSGRPPNGSKADWIMNEYRL 139 888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.1E-56	9	150	IPR003441	NAC domain
PROSITE profile	PS51005	53.931	12	161	IPR003441	NAC domain
Pfam	PF02365	1.1E-24	13	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MEGDQQGSHY SFPPGFRFHL SDEELIVHYL QNKISSRPLP ASIIAEIDLY KYNPWELPNK 60 SLFGEEEWYF FSPRDRKYPN GLRPNRAAAS GYWKATGTDK PILSSSGSKR IGVKKALVFY 120 SGRPPNGSKA DWIMNEYRLI DTATSSSRLK IGSFFCLIVY FHVFHSFMII FVILCSSPVD 180 TALLQHASTS FTCLRPSSSW NSCIQAITKL IIINS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-61	8	160	16	166	NAC domain-containing protein 19
3swm_B	1e-61	8	160	16	166	NAC domain-containing protein 19
3swm_C	1e-61	8	160	16	166	NAC domain-containing protein 19
3swm_D	1e-61	8	160	16	166	NAC domain-containing protein 19
3swp_A	1e-61	8	160	16	166	NAC domain-containing protein 19
3swp_B	1e-61	8	160	16	166	NAC domain-containing protein 19
3swp_C	1e-61	8	160	16	166	NAC domain-containing protein 19
3swp_D	1e-61	8	160	16	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. {ECO:0000250}.
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_14854

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	1e-104	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020224808.2	1e-110	NAC transcription factor 56, partial
Swissprot	A2YMR0	4e-71	NAC10_ORYSI; NAC transcription factor ONAC010
Swissprot	Q8H4S4	5e-71	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A151SYG9	1e-158	A0A151SYG9_CAJCA; NAC domain-containing protein 29
STRING	GLYMA13G40251.1	7e-99	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2416	29	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-71	NAC domain containing protein 25

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]