PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_14927
Common NameKK1_015361
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family WRKY
Protein Properties Length: 678aa    MW: 73688.8 Da    PI: 6.2798
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_14927genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.8e-32282339260
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                    dDgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k
  C.cajan_14927 282 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGAHNHPK 339
                    8****************************************.***************85 PP
2WRKY102.91.8e-32460518159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+
  C.cajan_14927 460 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 518
                    59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-29279340IPR003657WRKY domain
SuperFamilySSF1182901.01E-25280340IPR003657WRKY domain
SMARTSM007743.5E-36281339IPR003657WRKY domain
PROSITE profilePS5081123.502282340IPR003657WRKY domain
PfamPF031067.3E-25282338IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.4E-37445520IPR003657WRKY domain
SuperFamilySSF1182901.83E-28452520IPR003657WRKY domain
PROSITE profilePS5081138.32455520IPR003657WRKY domain
SMARTSM007741.9E-37460519IPR003657WRKY domain
PfamPF031066.8E-25461518IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MAGIDDNVAL TGDWGLPSPS PRTFFSRMLD EDNVTRSISE HSGNGRTGDL FLGIRDPSET  60
GKGNMKDGAQ DGDSRAQLSE QKSSSRGGLV ERMAARAGFN APRLNTESIR STDLSLNSDI  120
QSPYLTIPPG LSPTTLLDSP VFLANSLAQP SPTTGKFLFM SNSNMRNSEL PSDALEKCKD  180
NGFDMYTSSF AFKPATDSGS SFYHGAGRKI NPTTIPQQSL PGIEVSAQSE NSFQSQTDQM  240
AFDAAGGSTE HSTPIEEQAD EEGDQRVNGD SMSGGVGGAP SDDGYNWRKY GQKQVKGSEY  300
PRSYYKCTHP NCQVKKKVER SHEGHITEII YKGAHNHPKP PPNRRSGIGS VNLQTDMQVD  360
NPEHVEPQNG GDGDLGWTNT QNGTNIDSGE AVDASSTFSN EEDEDDQGTH GSVSLGYDGE  420
GDESESKRRK LESYAELSGA TRAIREPRVV VQTTSEVDIL DDGYRWRKYG QKVVKGNPNP  480
RSYYKCTNAG CTVRKHVERA SHDLKSVITT YEGKHNHDVP AARASSHVNA NASNAVSGQA  540
SGVLQNHVHR PEPSQVHNGI GRLERPSLGS FNLPGRQQLG PSHGFSFGMN QTMLSNFAMS  600
GLGHAQAKLP IMPVHPFLAQ QQQQQQHQHQ HRSANDLGFM MPKGEPNMET IPERGLNLSS  660
GSSVYQEIMS RMPLGPHM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36282521878Probable WRKY transcription factor 4
2lex_A1e-36282521878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_14927
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195891e-145EU019589.1 Glycine max WRKY59 (WRKY59) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020223534.10.0probable WRKY transcription factor 2
RefseqXP_020223536.10.0probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A151SYN70.0A0A151SYN7_CAJCA; Putative WRKY transcription factor 2
STRINGGLYMA04G12830.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]