PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_15444
Common NameKK1_015888
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 260aa    MW: 29391 Da    PI: 7.039
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_15444genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.8e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+++Ed  l+++ +++G+g +W + +++ g++R++k+c++rw++yl
    C.cajan_15444 14 RGPWSPDEDATLKNYLEKHGTGgNWIALPKKAGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding43.19.7e-1471111446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +T+eEd+++  +    G++ W++Ia+ ++ gRt++++k++w++
    C.cajan_15444  71 FTEEEDKIICTLYDTIGSR-WSLIAAQFP-GRTDNDVKNHWNT 111
                      9******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.679966IPR017930Myb domain
SuperFamilySSF466898.78E-2811109IPR009057Homeodomain-like
SMARTSM007171.8E-111364IPR001005SANT/Myb domain
PfamPF002495.5E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-231569IPR009057Homeodomain-like
CDDcd001671.60E-81662No hitNo description
SMARTSM007171.2E-1167115IPR001005SANT/Myb domain
PROSITE profilePS5129414.70767117IPR017930Myb domain
PfamPF002492.7E-1270111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-2270116IPR009057Homeodomain-like
CDDcd001674.54E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGRAPCCDKS NVKRGPWSPD EDATLKNYLE KHGTGGNWIA LPKKAGLRRC GKSCRLRWLN  60
YLRPHIKLGG FTEEEDKIIC TLYDTIGSRW SLIAAQFPGR TDNDVKNHWN TKLKKKFLAE  120
NTSVATSNNY TYSEQFSTFT DLQPQVEAFI LDQKLNSPWF GSNHVYDLEQ TPIPVPFPMP  180
QEFEAFDTGS SCSSTPPSKE VSMLSNAACL VQHNKHTQWF GYDHHANHED DPTLLQVVLE  240
DLLNHGFASS SSQVDLPKKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_15444
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9028631e-153DQ902863.1 Glycine max transcription factor MYBJ6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020221908.10.0transcription factor MYB36
RefseqXP_020221909.10.0transcription factor MYB36
SwissprotQ9FKL22e-69MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A151T2Z60.0A0A151T2Z6_CAJCA; Transcription factor RAX3
STRINGXP_007152944.11e-137(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.13e-72myb domain protein 68
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]