PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_15614

Common Name

KK1_016063

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

bHLH

Protein Properties

Length: 231aa MW: 25968.5 Da PI: 8.2328

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_15614	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.1	1.3e-07	142	189	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L+ ++P + k + a +L + ++Y++sLq C.cajan_15614 142 SHSLAERVRRGKINEKLRCLQNIVPGC----YKTMGMAIMLDEIINYVQSLQ 189 8*************************8....355888999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.57E-9	136	193	No hit	No description
SuperFamily	SSF47459	4.97E-16	136	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.589	138	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-15	138	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.0E-5	142	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-7	144	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MAEFNADFQS FRTSFPFLDV DNMEMHNLMP FDSFLGSPEP EFPGNLHDNF PGLVQCANNH 60 NAVPVLVPIS SIKNEIHQGR KRKGTDMCEP SSANSTSVVT ESGSKTRNGS RRGKRVKRNA 120 IEDKKPNEVV HVRAKRGQAT DSHSLAERVR RGKINEKLRC LQNIVPGCYK TMGMAIMLDE 180 IINYVQSLQH QVEFLSMKLT TASTYYDFNS ESDALETMQV VTIPKHFSAL C

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_15614

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT136059	1e-117	BT136059.1 Lotus japonicus clone JCVI-FLLj-3K3 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020220226.1	1e-165	transcription factor BEE 3
Swissprot	Q8GWK7	3e-59	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A151T3E6	1e-173	A0A151T3E6_CAJCA; Transcription factor BEE 3
STRING	GLYMA08G04661.1	1e-131	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3360	34	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73830.2	1e-61	BR enhanced expression 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]