PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_15660
Common NameKK1_016111
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NF-YA
Protein Properties Length: 200aa    MW: 22231.6 Da    PI: 7.7249
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_15660genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.41.3e-29105161158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    +ep++VNaKQy++Il+RRq+Rak+e+ekk  +++rkpy he Rh hAlrR+Rg+gGrF
  C.cajan_15660 105 EEPVFVNAKQYHGILRRRQSRAKAESEKKA-ARNRKPYFHEPRHLHALRRARGCGGRF 161
                    69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.3E-32103164IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.655104164IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.3E-25106161IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.6E-22107129IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860109129IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.6E-22138161IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
HCFIDNEADA QQQSEPQIQP LSANGISHAG IGTQVVPYAT PPQLGTGHAV APPTYPYPDS  60
YYRSIFTPYD AQTYPPQPYG GNPMVHLQLM GIQQAGVPLP TDTVEEPVFV NAKQYHGILR  120
RRQSRAKAES EKKAARNRKP YFHEPRHLHA LRRARGCGGR FLNSKKNENE QDEVASAEES  180
QSNINLNSDK NELAPSDRTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-18104169166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_15660
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029128208.11e-143nuclear transcription factor Y subunit A-7
SwissprotQ84JP15e-63NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A151T3J11e-147A0A151T3J1_CAJCA; Nuclear transcription factor Y subunit A-7 (Fragment)
STRINGGLYMA15G13660.21e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53793355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.24e-57nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]