PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_16266
Common NameKK1_016742
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NF-YA
Protein Properties Length: 223aa    MW: 24232.1 Da    PI: 9.2777
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_16266genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.45e-3370126158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    d p+YVNaKQy++Il+RRq+Rakle+++kl +ksrkpylheSRh+hAl+R RgsgGrF
  C.cajan_16266  70 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKSRKPYLHESRHRHALNRVRGSGGRF 126
                    57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.0E-3768129IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.85769129IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.9E-2872126IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.0E-257294IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068607494IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.0E-25103126IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MKPFLCLNLS DTEFNCSQVD CNHSMAHASY PYGDPFFSYG PQFTSQPQIL PQMLGLSSAR  60
VALPLDLTED GPIYVNAKQY HGILRRRQSR AKLEAQNKLI KSRKPYLHES RHRHALNRVR  120
GSGGRFLSTK QLPQSNAEYV TGAHSGSDPT NNPSEGESHS SKAGDNASSI TSCSDRPCLS  180
GNSVNFRQPE CIFLGNSANM GGAPPCSGGL TFGGTKQRAS VVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-2370131263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_16266
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0993700.0BT099370.1 Soybean clone JCVI-FLGm-13B20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020222017.11e-166nuclear transcription factor Y subunit A-7
SwissprotQ93ZH21e-39NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A151T5931e-164A0A151T593_CAJCA; Nuclear transcription factor Y subunit A-3
STRINGGLYMA15G18970.11e-136(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.16e-42nuclear factor Y, subunit A3