PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_16549

Common Name

KK1_017033

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NF-YA

Protein Properties

Length: 200aa MW: 22169.5 Da PI: 7.7249

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_16549	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.6	1.5e-31	105	161	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+ekk +++rkpylheSRh hAlrR+Rg+gGrF C.cajan_16549 105 EEPVFVNAKQYHGILRRRQSRAKAESEKKA-ARNRKPYLHESRHLHALRRARGCGGRF 161 69*************************9.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	7.0E-35	103	164	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.416	104	164	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.9E-27	106	161	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.0E-23	107	129	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	109	129	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.0E-23	138	161	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
HCFIDNEADA QQQSEPQIQP LSANGISHAG IGTQVVPYAT PPQLGTGHAV APPTYPYPDP 60 YYRSIFTPYD AQTYPPQPYG GNPMVHLQLM GIQQAGVPLP TDTVEEPVFV NAKQYHGILR 120 RRQSRAKAES EKKAARNRKP YLHESRHLHA LRRARGCGGR FLNSKKNENE QDEAASAEES 180 QSNINLNSDK NELAPSDRTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-20	104	169	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_16549

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020220662.1	1e-145	nuclear transcription factor Y subunit A-7 isoform X2
Refseq	XP_020220663.1	1e-145	nuclear transcription factor Y subunit A-7 isoform X2
Swissprot	Q84JP1	8e-66	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A151T636	1e-146	A0A151T636_CAJCA; Nuclear transcription factor Y subunit A-7 (Fragment)
STRING	GLYMA15G13660.2	1e-123	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-45	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]