PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_16945
Common NameKK1_017449
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ARF
Protein Properties Length: 630aa    MW: 70056 Da    PI: 6.6971
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_16945genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.17.9e-2477177198
                    EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                    f+kvlt sd++++g +++ +k+a+e+      + +++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   +  ++
  C.cajan_16945  77 FCKVLTASDTSTHGGFSVLRKHATEClpaldlS-QPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGANG 169
                    99****************************953.4555679************************************************..34899 PP

                    ..EEEEE- CS
             B3  91 elvvkvfr 98 
                    el+v+v+r
  C.cajan_16945 170 ELRVGVRR 177
                    99****98 PP
2Auxin_resp97.12.6e-32203284183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    a+ha+st++ F v+Y+Pr+  s+F++ v+k+++a+++k+svGmRf+m+fe++ds+e  +r+sGt+vgv+d++p  W nSkWrsLk
  C.cajan_16945 203 ASHAVSTQTLFVVYYKPRT--SQFIIGVNKYLQAMDNKFSVGMRFRMRFEGDDSAEtdKRFSGTIVGVEDISP-YWVNSKWRSLK 284
                    789***************6..9********************************9833577***********9.9********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.23E-3872206IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-3973192IPR015300DNA-binding pseudobarrel domain
CDDcd100174.91E-2175177No hitNo description
PROSITE profilePS5086312.13977179IPR003340B3 DNA binding domain
PfamPF023628.3E-2277177IPR003340B3 DNA binding domain
SMARTSM010198.6E-2277179IPR003340B3 DNA binding domain
PfamPF065073.8E-30203284IPR010525Auxin response factor
PfamPF023093.7E-12395602IPR033389AUX/IAA domain
PROSITE profilePS5174524.382518599IPR000270PB1 domain
SuperFamilySSF542771.53E-12521594No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MEQLEASTNQ ELNQRIPLLK LPTKILCRVI NVHLLAEQET DEVYAQITLV PESNQDEPTS  60
ADPCTAEPPR AAPVHSFCKV LTASDTSTHG GFSVLRKHAT ECLPALDLSQ PTPTQELVAK  120
DLHGYEWRFK HIFRGQPRRH LLTTGWSTFV TSKRLVAGDT FVFLRGANGE LRVGVRRLAR  180
QASSMPSSVI SSQSMHLGVL ATASHAVSTQ TLFVVYYKPR TSQFIIGVNK YLQAMDNKFS  240
VGMRFRMRFE GDDSAETDKR FSGTIVGVED ISPYWVNSKW RSLKVQWDEP AAVPRPDRVS  300
PWEIEPFVAS ASTPSVQPAI VKTKRPRPPS EIPEVDTTSA ASVFWDAGLP QADNMAQINV  360
LAESKRNENT GTWHHLQTDM NSKSNSNNTM LRNQTEGSWL SSPHSSCPPH LFQDTTDDSK  420
SVSAWPVSKP PSSRLNHDHA PDQVDKESKV ETATSYRLFG IELIDHSRNS PALEKASAHA  480
VNVPKVTTEG SASTLSRADA GQNLIRIFSN MNLQLMFKTC QKVQMQGVAV GRAVDLTMLD  540
GYKQLINALE EMFDIKGQLQ HRNKWEIVFT DDEGDMMLVG DDPWPEFCNM VRRIFICSSQ  600
DVKKMSSGSK LPISSSVEDG TVISSDTTET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-148130749355Auxin response factor 1
4ldw_A1e-148130749355Auxin response factor 1
4ldw_B1e-148130749355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323327KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_16945
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-163AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020220654.10.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A151T7560.0A0A151T756_CAJCA; Auxin response factor
STRINGGLYMA01G25270.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9