PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_17157
Common NameKK1_017666
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NAC
Protein Properties Length: 189aa    MW: 21847.3 Da    PI: 4.9268
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_17157genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM122.24.7e-3881271128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrF Ptdeelvv++L++k++  +++  +vi+++++y ++Pw+L+ ++ ae ++wy++s+r         +nr+t +gyWk tg +++v+s  
  C.cajan_17157   8 LPPGFRFYPTDEELVVHFLHRKASLLPCHP-DVIPDLEVYPYDPWELDGRALAEGNQWYYYSRRT--------QNRVTGNGYWKPTGMEEPVVSGt 94 
                    79*************************999.99**************977778899******984........58******************986 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +++ vg+kk +vf+ g+a  g kt+W+m+eyrl
  C.cajan_17157  95 NNKRVGMKKYFVFHVGEAAAGIKTNWIMQEYRL 127
                    7788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-506157IPR003441NAC domain
PROSITE profilePS5100546.6938158IPR003441NAC domain
PfamPF023652.9E-239127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGDSNVNLPP GFRFYPTDEE LVVHFLHRKA SLLPCHPDVI PDLEVYPYDP WELDGRALAE  60
GNQWYYYSRR TQNRVTGNGY WKPTGMEEPV VSGTNNKRVG MKKYFVFHVG EAAAGIKTNW  120
IMQEYRLSDS ASSTRSSKRK SQQKMDYNKW VICRVYERNG DDDNGTELSC LDEVFLSLDD  180
DFDEISLPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-42415913166NO APICAL MERISTEM PROTEIN
1ut4_B9e-42415913166NO APICAL MERISTEM PROTEIN
1ut7_A9e-42415913166NO APICAL MERISTEM PROTEIN
1ut7_B9e-42415913166NO APICAL MERISTEM PROTEIN
3swm_A8e-42415916169NAC domain-containing protein 19
3swm_B8e-42415916169NAC domain-containing protein 19
3swm_C8e-42415916169NAC domain-containing protein 19
3swm_D8e-42415916169NAC domain-containing protein 19
3swp_A8e-42415916169NAC domain-containing protein 19
3swp_B8e-42415916169NAC domain-containing protein 19
3swp_C8e-42415916169NAC domain-containing protein 19
3swp_D8e-42415916169NAC domain-containing protein 19
4dul_A9e-42415913166NAC domain-containing protein 19
4dul_B9e-42415913166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_17157
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6619181e-155EU661918.1 Glycine max NAC domain protein (NAC18) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020221468.11e-142NAC domain-containing protein 104
SwissprotQ8GWK63e-83NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A151T7W21e-140A0A151T7W2_CAJCA; NAC domain-containing protein 68
STRINGGLYMA08G19300.11e-124(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.15e-83xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]