PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_17292
Common NameKK1_017803
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 637aa    MW: 75856.8 Da    PI: 8.6948
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_17292genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.8e-07197216625
                    -SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                    C+f+++tG C++G rC++ H
  C.cajan_17292 197 CPFHLKTGACRFGLRCSRVH 216
                    ******************99 PP
2zf-CCCH28.62.4e-09328355126
                    --S---SGGGGTS..--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                    +k ++C  ++++G  tC++G  C+F+H+
  C.cajan_17292 328 WKVAICGEYMKSGfkTCSHGTACNFIHC 355
                    899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.779191219IPR000571Zinc finger, CCCH-type
SMARTSM003562.2192218IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-5196216IPR000571Zinc finger, CCCH-type
PRINTSPR018485.0E-37197216IPR009145U2 auxiliary factor small subunit
PRINTSPR018485.0E-37216236IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010210.48223325IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3308.0E-27223323IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd125402.29E-49224324No hitNo description
SMARTSM003610.0011240321IPR003954RNA recognition motif domain, eukaryote
PRINTSPR018485.0E-37254269IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549281.76E-15257325IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018485.0E-37282304IPR009145U2 auxiliary factor small subunit
PRINTSPR018485.0E-37309333IPR009145U2 auxiliary factor small subunit
SMARTSM003563.4E-4327356IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.465327357IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6328355IPR000571Zinc finger, CCCH-type
PRINTSPR018485.0E-37347359IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MLWGGTEEKS NRKMEEGKSR KEKRKAMKKM KRKQTRREAA ERERREEEER LKDPEEQRLM  60
QLAEQQEVER MQRERILFEE RERAWMERII QKQDDLEEKE KEKEDQDEDE YQYVQDEGPP  120
EIIWQGNEII FKKKQLRVRV ADKNENHQDK NNRPVSNPLP PESESQSQSQ SESHTHMLQD  180
VAQHIPNFGT EQDKAHCPFH LKTGACRFGL RCSRVHFYPD KSSTLLIKNM YNGPGLACDR  240
DQDEGLEYTD EEVERCFEEF YEDVHTEFLK FGEIVNFKVC KNGSFHLRGN VYVQYKLLDS  300
ALLAYNSVNG RYFAGKQVSC QFVNLTRWKV AICGEYMKSG FKTCSHGTAC NFIHCFRNPG  360
GDYEWADSDK PPPKYWVKKM VALFGYSVDY ETSGERGNLS LPKNISKTDS DRYHHSRRSR  420
SREMDQLNCG HSSRRKQDER KPRTPDKERN ANFKNKHKRK SRSRTPDADP DKELLEKEEN  480
KERHRKHTWN SSFNRNRGNN KSREEDSDVD WDTGDNGKQH RREGRNSRKW NRDIRVWISE  540
AEEDRNSDRD DKMRHISKSK RSRHRSGDAS ESNKDLLGRG EMETHHDYSR KSSKHIRSGL  600
QDDYIYYENE NDKDDGGRPP RESYKREHRH NKKRSEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A2e-311813541167Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_17292
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150388e-64AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020220373.10.0zinc finger CCCH domain-containing protein 5
SwissprotQ9SY741e-172C3H5_ARATH; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A151T8750.0A0A151T875_CAJCA; Zinc finger CCCH domain-containing protein 5
STRINGXP_007148590.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47132433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-135C3H family protein
Publications ? help Back to Top
  1. Lorković ZJ,Wieczorek Kirk DA,Lambermon MH,Filipowicz W
    Pre-mRNA splicing in higher plants.
    Trends Plant Sci., 2000. 5(4): p. 160-7
    [PMID:10740297]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]