PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_17296
Common NameKK1_017807
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ARF
Protein Properties Length: 613aa    MW: 68464.9 Da    PI: 5.7577
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_17296genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.73.7e-1776158178
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                    f+k+lt sd++++g +++ +++a+++       ++++ +  +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +g+
  C.cajan_17296  76 FCKTLTASDTSTHGGFSVLRRHADDClppldmtQQPPWQ--ELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGE 158
                    99****************************975444444..8***************************************9996 PP
2Auxin_resp111.77.4e-37194276183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    a+ha++t++ F+v+Y+Pr+s+seF+v+v+k+++a ++k+svGmRfkm+fe+++++err+sGt+vgv d +++ W +S+WrsLk
  C.cajan_17296 194 ASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSSVWADSEWRSLK 276
                    789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-3865197IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-3273183IPR015300DNA-binding pseudobarrel domain
CDDcd100171.76E-1674168No hitNo description
SMARTSM010192.9E-1476170IPR003340B3 DNA binding domain
PfamPF023623.4E-1576158IPR003340B3 DNA binding domain
PfamPF065074.9E-35194276IPR010525Auxin response factor
PfamPF023091.3E-11486579IPR033389AUX/IAA domain
PROSITE profilePS5174527.084489582IPR000270PB1 domain
SuperFamilySSF542774.32E-11491566No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MEQLEASMNQ GLEQQMPSFN LPSKILCKVV NVHLRAEPET DEVYAQITLL PEADQNEVMS  60
PDDPLPEPAR CTVHSFCKTL TASDTSTHGG FSVLRRHADD CLPPLDMTQQ PPWQELVATD  120
LHGNEWHFRH IFRGQPRRHL LTTGWSVFVS SKKLVAGENG ELRVGVRRLM RQQNNMPSSV  180
ISSHSMHLGV LATASHAIAT GTLFSVFYKP RTSRSEFIVS VNKYLEAQSH KLSVGMRFKM  240
RFEGDEVPER RFSGTIVGVG DNKSSVWADS EWRSLKVQWD EPSSILRPDR VSSWELEPLV  300
STPPTNSQPS QRNKRSRPPI LSSTMPDSSL QGVWKSPVES APFSYRDHQH GRDVYSSPKF  360
NSTATGFLGF GGNCSASNKS IYWSSRMENS TESFSPVALQ ESGEKRQGTG NGCRLFGIQL  420
LENSNEESLP MVTLSGRVGD DGPLPSLDAE SDQHSEPSNV NRSDIPSVSC DAEKSCLRSP  480
QESQSRQIRS CTKVHMQGMA VGRAVDLTRF DGYEDLLRKL EEMFDIKGEL CGSTKKWQVV  540
YTDNEDDMMM VGDDPWLEFC SIVRKIFIYT AEEVKKLSPK IGIPINEEVK PSKMDSEAVV  600
NPEDQSSIVG PDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.0130149357Auxin response factor 1
4ldw_A0.0130149357Auxin response factor 1
4ldw_B0.0130149357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_17296
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-141AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020220288.10.0auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A151T8570.0A0A151T857_CAJCA; Auxin response factor
STRINGGLYMA12G28550.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68022638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]