PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_17323
Common NameKK1_017834
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 625aa    MW: 68886 Da    PI: 6.5051
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_17323genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52e-07228248526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C++f++ G C++Gd C +aHg
  C.cajan_17323 228 PCPDFRK-GACRRGDMCEYAHG 248
                    8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.9E-917121IPR020683Ankyrin repeat-containing domain
CDDcd002041.94E-825119No hitNo description
SuperFamilySSF484034.81E-925118IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00586797IPR002110Ankyrin repeat
PROSITE profilePS502978.61467119IPR020683Ankyrin repeat-containing domain
PfamPF136060.00356996IPR002110Ankyrin repeat
SMARTSM002483300102131IPR002110Ankyrin repeat
SMARTSM003564.0E-6223249IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4227250IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-5228248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582228250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4256286IPR000571Zinc finger, CCCH-type
SMARTSM0035637258281IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MSASQPRSHI MNHLTIETED SFASLLELAA NNDVEGFRRM IERDPSCVDE VGLWYSRRKG  60
SRLMVNELRT PLMIAATYGS IDVMDLILSL SGYDINKPCG LDKSTALHCA ASVCNLRVIT  120
TPSNASYSPP LSTSPDDGSP SAADFQLKSK LNDDFVSSAS EKKEYPVDPS LPDIKNSIYS  180
TDEFRMYSFK VRPCSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP DFRKGACRRG  240
DMCEYAHGVF ECWLHPAQYR TRLCKDGISC SRRVCFFAHT AEELRPLYIS TGSAVPSPRS  300
SSSSAMDFAA AMNMLPGTPS SMSVMSPSPF TPPMSPSGNG MSHSSVAWPH PHVPALHLPG  360
SNLHSSRLRS SFNARDIPMD DFDLSDYDVQ QQQQQQLLNE LSCLSKQPNA MNRSGRIKTL  420
NPSNLDELFS SESSSPRFAD PALASAVFSP THKSAVFNQF QHQQSLMSPR NMEPISPMSS  480
RISALAQREK QQQFRSLSSR ELGSNSATVA VAGESQVSSL SKWGSSNGAL DWTVNGDESG  540
KLRRSSSFET GNNGEEPDFS WVQSLVKESP SEIKENSAKT VTSVAAAGSS SEVSNMSMQT  600
DTIDHAMLGA WLEQMQLDHL VVQQN
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_17323
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020218932.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_029127895.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A151T8A00.0A0A151T8A0_CAJCA; Zinc finger CCCH domain-containing protein 30
STRINGGLYMA10G21950.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]