PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_17916
Common NameKK1_018447
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GATA
Protein Properties Length: 255aa    MW: 28049.6 Da    PI: 7.8308
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_17916genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.4e-16191227135
           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  C.cajan_17916 191 CHHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 227
                    *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.8685287IPR010399Tify domain
SMARTSM009798.5E-75287IPR010399Tify domain
PfamPF062008.0E-105586IPR010399Tify domain
PROSITE profilePS5101712.719120162IPR010402CCT domain
PfamPF062034.3E-15120161IPR010402CCT domain
PROSITE profilePS501148.629185244IPR000679Zinc finger, GATA-type
SMARTSM004013.8E-10185238IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.2E-15189232IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577168.08E-12189235No hitNo description
CDDcd002024.75E-15190234No hitNo description
PROSITE patternPS003440191218IPR000679Zinc finger, GATA-type
PfamPF003205.1E-14191227IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MATVNPQPLQ FEDPDIPVDD DDDAMDELED ANVNSVSVAN AASASHEAVL AMPSRTSELT  60
LSFEGEVYVF PAVTPQKVQA VLLLLGGRDV QAGMPTVEQP IDQSNRGMGD TPKRSNLSRR  120
IASLVRFREK RKERCFDKKI RYSVRKEVAQ RMHRKNGQFA SLKENPGSSN WDSAQSTGQD  180
GTLHSESVRR CHHCGVSENN TPAMRRGPAG PRTLCNACGL MWANKGTLRD LSKGGRNLTV  240
EQSDLVCKTG SLMFF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109114DTPKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_17916
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0934500.0BT093450.1 Soybean clone JCVI-FLGm-17E18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020218627.10.0GATA transcription factor 24
SwissprotQ8GXL72e-71GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A151T9X10.0A0A151T9X1_CAJCA; GATA transcription factor 27
STRINGGLYMA04G10340.11e-160(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-71ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]