PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_17917
Common NameKK1_018448
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GATA
Protein Properties Length: 180aa    MW: 20058.9 Da    PI: 10.2352
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_17917genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11.1e-17121156134
           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                    C++Cgt++  Tp++Rrgp+g+++LCnaCGl+++ +g
  C.cajan_17917 121 CTHCGTSSksTPMMRRGPSGPRSLCNACGLFWANRG 156
                    ********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101712.545395IPR010402CCT domain
PfamPF062033.7E-165395IPR010402CCT domain
PROSITE profilePS5011410.356115175IPR000679Zinc finger, GATA-type
SMARTSM004011.7E-14115168IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.0E-12118166No hitNo description
Gene3DG3DSA:3.30.50.103.6E-16119162IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.3E-15121156IPR000679Zinc finger, GATA-type
CDDcd002024.31E-14121166No hitNo description
PROSITE patternPS003440121148IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MFLFPVATLL QVQSVFLLLG GSELTSGSQC VAMSPQNQTG AAEYPVRCSL PQRAASLSRF  60
RQKRKERCFD KKVRYSVRQE VALRMHRNKG QFTSSKKQDG TNSWGSDQES GQDLVQSETL  120
CTHCGTSSKS TPMMRRGPSG PRSLCNACGL FWANRGALRD LSKRNQEHSL ALPEQVCFHL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_17917
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0968950.0BT096895.1 Soybean clone JCVI-FLGm-21G2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020218629.11e-121GATA transcription factor 25
SwissprotQ9LRH68e-72GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A151T9Z61e-130A0A151T9Z6_CAJCA; GATA transcription factor 26
STRINGGLYMA06G10280.11e-109(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.33e-68GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]