PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_17974
Common NameKK1_018505
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 350aa    MW: 38593.2 Da    PI: 7.6138
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_17974genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-1886131147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ede+l+d+v+q+G+ +W++Ia+++  gR++k+c++rw++ 
    C.cajan_17974  86 RGHWRPAEDEKLKDLVAQYGPQNWNLIAEHLE-GRSGKSCRLRWFNQ 131
                      899*****************************.***********996 PP
2Myb_DNA-binding574.4e-18138181146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+ 
    C.cajan_17974 138 RRSFSEEEEERLLAAHKMYGNK-WAMIARLFP-GRTDNAVKNHWHV 181
                      6789******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.52181132IPR017930Myb domain
SMARTSM007171.7E-1585134IPR001005SANT/Myb domain
PfamPF002493.4E-1786131IPR001005SANT/Myb domain
SuperFamilySSF466896.74E-2986179IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-2787139IPR009057Homeodomain-like
CDDcd001671.03E-1489130No hitNo description
PROSITE profilePS5129427.066133187IPR017930Myb domain
SMARTSM007172.1E-15137185IPR001005SANT/Myb domain
PfamPF002491.5E-14138180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-20140185IPR009057Homeodomain-like
CDDcd001678.66E-8149180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGFFPSSLFV GSSQGHPLSM GPKAEMGLQI LSPSVFQHPQ ESMGTRRVIS DEGVENKNLC  60
LKLGEEVEEV KGSASGKNGY TKLCARGHWR PAEDEKLKDL VAQYGPQNWN LIAEHLEGRS  120
GKSCRLRWFN QLDPRINRRS FSEEEEERLL AAHKMYGNKW AMIARLFPGR TDNAVKNHWH  180
VIMARRQREQ SSNVYRRRKP TISEALPKGN LNLTLSNNAA SESTISSTID ESASTCTNPS  240
LTPSSAKLTP FGLFDQLGPA QNHQPFGSLM GQSREGGDVS FNKFFGAWKG EAVGKVMGVD  300
QSNFSDANSE VSVSESVATY RSNLSISEES ETVGDKINMP FIDFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-35861867107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_17974
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311831e-153KT031183.1 Glycine max clone HN_CCL_37 MYB/HD-like transcription factor (Glyma03g00980.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020218437.10.0transcription factor MYB54
TrEMBLA0A151TA380.0A0A151TA38_CAJCA; Transcription factor MYB44
STRINGGLYMA19G29670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-65myb domain protein 105