PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_17992
Common NameKK1_018523
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family WRKY
Protein Properties Length: 474aa    MW: 51694.2 Da    PI: 7.2244
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_17992genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.3e-33193249259
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  +++v+ i+Y+geHnh+
  C.cajan_17992 193 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSL-EGHVTAIIYKGEHNHQ 249
                    8****************************************.***************8 PP
2WRKY107.66e-34361419159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  C.cajan_17992 361 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHD 419
                    59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-29178251IPR003657WRKY domain
SuperFamilySSF1182905.1E-26190251IPR003657WRKY domain
SMARTSM007741.2E-36192250IPR003657WRKY domain
PfamPF031061.5E-25193249IPR003657WRKY domain
PROSITE profilePS5081123.422193251IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-37346421IPR003657WRKY domain
SuperFamilySSF1182908.11E-30353421IPR003657WRKY domain
PROSITE profilePS5081138.836356421IPR003657WRKY domain
SMARTSM007741.3E-39361420IPR003657WRKY domain
PfamPF031063.0E-26362419IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MAGAGNGGLP PWKEAPPPPR PTISLPPRPA SMDTLFTGGF SPGPMTLLSN FLADGDDCKS  60
FSQLLAGAMT SPVTGAAVLD SPAGLFSPNQ ISNSTHDNEN FIICVSFGMT HQQALAQVSV  120
QAAHTNSNIH IQPQHSLPLS VSQVPAAAAS NTTQHLIPPL SADSWAAMAE SADHSHAEQR  180
SQSSSMNVDK PADDGYNWRK YGQKQVKGSE FPRSYYKCTH PNCPVKKKVE RSLEGHVTAI  240
IYKGEHNHQR PQPNKRSKDT IMASNENENV QGNVDSSHQG ASTNSMMKMD PESSQATADR  300
LSGTSDSEEV GDHETEVDEK NVELDPKRRK TEVMHSDPAS SHRTVTEPRI IVQTTSEVDL  360
LDDGYRWRKY GQKVVKGNPY PRSYYKCTTP GCNVRKHVER ASTDPKAVIT TYEGKHNHDV  420
PAAKTNSHTM ASNTASQLKS QNSNPEKHSF GSRDTGGNEQ QPVARLRLKE EQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-44193422878Probable WRKY transcription factor 4
2lex_A5e-44193422878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325331PKRRKTE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_17992
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195570.0EU019557.1 Glycine max WRKY9 (WRKY9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020218448.10.0probable WRKY transcription factor 4 isoform X1
SwissprotQ9XI901e-150WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A151TA770.0A0A151TA77_CAJCA; Putative WRKY transcription factor 4
STRINGGLYMA01G06550.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.21e-141WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]