PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_18025
Common NameKK1_018556
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 266aa    MW: 29780 Da    PI: 8.784
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_18025genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.66e-131447135
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35
                     +g+WT+eEd++l+ +v+++G g+W++++++ g + 
    C.cajan_18025 14 KGPWTPEEDKKLISYVEKHGHGNWRSVPAKAG-NT 47
                     79****************************99.43 PP
2Myb_DNA-binding22.82.1e-0758792446
                     HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46
                     W+ Ia++++ +Rt++++k++w++
    C.cajan_18025 58 WSIIAAHLP-KRTDNEIKNYWNT 79
                     9********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.905985IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-141246IPR009057Homeodomain-like
SMARTSM007173.3E-161383IPR001005SANT/Myb domain
SuperFamilySSF466892.33E-151482IPR009057Homeodomain-like
PfamPF002491.1E-111448IPR001005SANT/Myb domain
CDDcd001672.52E-141681No hitNo description
Gene3DG3DSA:1.10.10.603.5E-105895IPR009057Homeodomain-like
PfamPF002491.6E-55879IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGRMACCEKV GLKKGPWTPE EDKKLISYVE KHGHGNWRSV PAKAGNTTSP YLSFNLLWSI  60
IAAHLPKRTD NEIKNYWNTN IKKRLIRMGL DPKTHKPMKP NTFEGYGDSH DHSKDSINMG  120
HVAQWESARV EAEARGSMLQ VGSGSSLLPR LFLSKIPTHQ PLSTQHGIMY NMHALVLAIN  180
HEIKSSVSTL GIPKFPTLTT NIGQFTDAES SRGNVIEINS QIQKEMKNYV SDLKDDDDIM  240
VAVEAFRTAR CESIEELFNG STSMVI
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_18025
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020219661.10.0transcription factor MYB16
SwissprotQ9LXF19e-49MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A151TAA30.0A0A151TAA3_CAJCA; Protein ODORANT1
STRINGGLYMA02G12242.11e-120(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13536826
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.14e-51myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]