PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_18031
Common NameKK1_018562
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NF-YB
Protein Properties Length: 85aa    MW: 9120.25 Da    PI: 7.4424
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_18031genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB85.37.2e-272577254
          NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkc 54
                   reqdr+lPian+s imkk+lPan+ki+kd+ketvqecvsefisf+tse+s+  
  C.cajan_18031 25 REQDRYLPIANISCIMKKALPANSKIAKDTKETVQECVSEFISFITSESSKSG 77
                   89**********************************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.01E-151475IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.5E-242175IPR009072Histone-fold
PfamPF008081.5E-143075IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MAEGPASPGC GSHDSGDHSP RSNIREQDRY LPIANISCIM KKALPANSKI AKDTKETVQE  60
CVSEFISFIT SESSKSGTRG ILTHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-212475152Transcription factor HapC (Eurofung)
4g92_B5e-212475152Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_18031
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020213249.11e-42nuclear transcription factor Y subunit B-10
SwissprotQ8VYK41e-30NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A151TAC15e-56A0A151TAC1_CAJCA; Nuclear transcription factor Y subunit B-8
STRINGGLYMA03G33490.14e-41(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2127344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.38e-25nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]