PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_18393

Common Name

KK1_018930

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

C3H

Protein Properties

Length: 633aa MW: 68834.8 Da PI: 6.7204

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_18393	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.5	2e-07	238	258	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg C.cajan_18393 238 PCPDFRK-GACRRGDMCEYAHG 258 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	2.8E-9	32	131	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	6.28E-7	38	131	No hit	No description
Gene3D	G3DSA:1.25.40.20	3.5E-8	38	131	IPR020683	Ankyrin repeat-containing domain
SMART	SM00356	4.0E-6	233	259	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	238	260	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.3E-4	238	260	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.5E-5	238	258	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.3E-4	266	296	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	37	268	291	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence Send to blast
MCGGPEKSKS LSTSSSSSSA VEGSTNGKDM KNLTVHTEDS FSCLLELASN NDFEDFKLAL 60 DRDASLINEV GIWYVRQIGS KQIVLEHRTP LMVAATYGSI DVLKLVLSFP EADVNFSCGT 120 DRSTALHCAA SGVSIISSSP ESAAHLSPEN GLPSSPTVSK FTDTSVYSIS EKKEYPIDPS 180 LPDIKNSIYA TDEFRMFSFK VRPCSRAYSH DWTECPFVHP GENARRRDPR KFHYSCVPCP 240 DFRKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTSC NRRVCFFAHT TEELRPLYVS 300 TGSAVPSPRS SASTPNVMDM AAAMSMFPGS PSSISSMSQS PFAQPMSPST NGISHSSTAW 360 SQPNVPALHL PGSNIHTSRL RSSLNARDMT PEDLDMLRDF DGQQHLLNDL GCFSQPRPGA 420 ISVSRSGRSK TLTPSNLDDL FSAEISSSPR YSDPAAASVF SPTHKSAILN QFQQLQSSMS 480 PRSMEPISPM GSRLSAFAQR EKQQQQLRSL SSRDLGANNP VSAVGSPVNS WSNWGSPHGN 540 GKVDWSVNGN GHGLGRLHRS SSFELGNNGE EPDLSWVQSL VKESPSEMKE KKLAGSGPVG 600 SADGLNSNPQ VESIDHSVLG AWLEQMQLDQ LVV

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence Send to blast

MCGGPEKSKS LSTSSSSSSA VEGSTNGKDM KNLTVHTEDS FSCLLELASN NDFEDFKLAL  60
DRDASLINEV GIWYVRQIGS KQIVLEHRTP LMVAATYGSI DVLKLVLSFP EADVNFSCGT  120
DRSTALHCAA SGVSIISSSP ESAAHLSPEN GLPSSPTVSK FTDTSVYSIS EKKEYPIDPS  180
LPDIKNSIYA TDEFRMFSFK VRPCSRAYSH DWTECPFVHP GENARRRDPR KFHYSCVPCP  240
DFRKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTSC NRRVCFFAHT TEELRPLYVS  300
TGSAVPSPRS SASTPNVMDM AAAMSMFPGS PSSISSMSQS PFAQPMSPST NGISHSSTAW  360
SQPNVPALHL PGSNIHTSRL RSSLNARDMT PEDLDMLRDF DGQQHLLNDL GCFSQPRPGA  420
ISVSRSGRSK TLTPSNLDDL FSAEISSSPR YSDPAAASVF SPTHKSAILN QFQQLQSSMS  480
PRSMEPISPM GSRLSAFAQR EKQQQQLRSL SSRDLGANNP VSAVGSPVNS WSNWGSPHGN  540
GKVDWSVNGN GHGLGRLHRS SSFELGNNGE EPDLSWVQSL VKESPSEMKE KKLAGSGPVG  600
SADGLNSNPQ VESIDHSVLG AWLEQMQLDQ LVV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_18393

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235224	0.0	AC235224.1 Glycine max strain Williams 82 clone GM_WBb0024G20, complete sequence.
GenBank	AC235302	0.0	AC235302.1 Glycine max strain Williams 82 clone GM_WBb0063H09, complete sequence.
GenBank	AC235375	0.0	AC235375.1 Glycine max strain Williams 82 clone GM_WBb0107H17, complete sequence.
GenBank	AC235402	0.0	AC235402.1 Glycine max strain Williams 82 clone GM_WBb0123O20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020218706.1	0.0	zinc finger CCCH domain-containing protein 30
Refseq	XP_029128007.1	0.0	zinc finger CCCH domain-containing protein 30
Refseq	XP_029128008.1	0.0	zinc finger CCCH domain-containing protein 30
Swissprot	Q10EL1	0.0	C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBL	A0A151TBD0	0.0	A0A151TBD0_CAJCA; Zinc finger CCCH domain-containing protein 24
STRING	GLYMA15G43030.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1732	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-176	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]