PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_18526
Common NameKK1_019068
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LBD
Protein Properties Length: 206aa    MW: 22587 Da    PI: 8.2964
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_18526genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.74.5e-39161161100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdPvyG+v+++++lqqq+++l+ael 
  C.cajan_18526  16 PCGACKFLRRKCVKGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLMRIPAHKRLDAVVTLCYEALARTRDPVYGCVAHLFALQQQVMNLQAELT 111
                    7***********************9989******************************************************************** PP

         DUF260  96 llkee 100
                    +++++
  C.cajan_18526 112 YVQAR 116
                    99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.10215117IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-3816114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDCGGKIGGG TERGGPCGAC KFLRRKCVKG CIFAPYFDSD QGTAHFAAVH KVFGASNASK  60
LLMRIPAHKR LDAVVTLCYE ALARTRDPVY GCVAHLFALQ QQVMNLQAEL TYVQARLATM  120
RMPMQVAPLP HPQTSSPLTL HSSDHLASNA DLQSAPMHLD PILPLELSNV FNPSDQQLED  180
RELQALAREF VTRYLPGVRF QPSNSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-36141179111LOB family transfactor Ramosa2.1
5ly0_B5e-36141179111LOB family transfactor Ramosa2.1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
139GGKIGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_18526
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354101e-111AC235410.1 Glycine max strain Williams 82 clone GM_WBb0128C24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020220027.11e-153LOB domain-containing protein 19
SwissprotO813228e-70LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A151TBN71e-151A0A151TBN7_CAJCA; LOB domain-containing protein 31
STRINGXP_007134896.11e-124(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.13e-70LOB domain-containing protein 31