PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_18579
Common NameKK1_019122
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 214aa    MW: 24381 Da    PI: 10.0403
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_18579genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.3e-16126210191
                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                    f+k++++s+ +   +l lp +f++++  +    ++  +tl de+g+++   +  rk++    l++GWk+F+ a++L +gD ++F+l++r+ f+
  C.cajan_18579 126 FIKTMLQSHISGGFWLGLPVHFCKSNlpK----GDEVMTLIDEDGNEYPTIYLARKTG----LSGGWKGFAVAHDLADGDALIFQLIKRTAFK 210
                    89*********************999543....4458***************656665....*************************988774 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-19118212IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-23119213IPR015300DNA-binding pseudobarrel domain
CDDcd100175.27E-26124211No hitNo description
SMARTSM010191.0E-19126212IPR003340B3 DNA binding domain
PROSITE profilePS5086311.787126214IPR003340B3 DNA binding domain
PfamPF023627.7E-14126210IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVAAYEESRR KRLEENRKRM EALNLPLLSQ ALHKSSPSKS SPLKQHAKSR TIEKEVVVVR  60
RSSRVANLPS PVYKEVVIDR VTIPRRTYSK HRDYANRVYA SDEAREEALE KADKLMSDLE  120
SQYPTFIKTM LQSHISGGFW LGLPVHFCKS NLPKGDEVMT LIDEDGNEYP TIYLARKTGL  180
SGGWKGFAVA HDLADGDALI FQLIKRTAFK VIKY
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_18579
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020219555.11e-137B3 domain-containing protein At5g42700 isoform X1
RefseqXP_020219556.11e-137B3 domain-containing protein At5g42700 isoform X2
SwissprotQ9FMZ41e-77Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A151TBU31e-157A0A151TBU3_CAJCA; B3 domain-containing protein At5g42700 family
STRINGGLYMA04G04030.11e-133(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-75B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]