PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_18738
Common NameKK1_019285
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 221aa    MW: 25339.9 Da    PI: 9.8109
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_18738genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445e-141057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++ Ed+ll+  v+ +G g W++++++ g++R+ k+c+ rw++yl
    C.cajan_18738 10 KGAWSKIEDDLLKTWVQIYGEGKWHLVPQRAGLNRCSKSCRMRWLNYL 57
                     79********************************************97 PP
2Myb_DNA-binding48.12.7e-1563108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++E +  ++++k+lG++ W++Ia +++ gRt +++k++w++y+
    C.cajan_18738  63 RGDFSEDEIDMMIRLHKLLGNR-WSLIAGRLP-GRTSNDVKNYWNTYM 108
                      899*******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.492557IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-20660IPR009057Homeodomain-like
SuperFamilySSF466894.77E-277104IPR009057Homeodomain-like
SMARTSM007174.6E-13959IPR001005SANT/Myb domain
PfamPF002495.6E-131057IPR001005SANT/Myb domain
CDDcd001678.28E-91257No hitNo description
PROSITE profilePS5129423.65458112IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-2361112IPR009057Homeodomain-like
SMARTSM007172.2E-1462110IPR001005SANT/Myb domain
PfamPF002491.1E-1363107IPR001005SANT/Myb domain
CDDcd001671.02E-966108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MEGSSSGVRK GAWSKIEDDL LKTWVQIYGE GKWHLVPQRA GLNRCSKSCR MRWLNYLKPN  60
IKRGDFSEDE IDMMIRLHKL LGNRWSLIAG RLPGRTSNDV KNYWNTYMRR KVQSHNNDNN  120
VKQQEVESTV KPHEVIKPVP RSLSKTSSLL QGKFISSSKV GVRETSAGSL LGSENWWETL  180
LDDKEDNACN NKCFFDGGDG SLDLWDILFP LIVTFLHKVK L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-25101124105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-24101124105C-Myb DNA-Binding Domain
1msf_C1e-24101124105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_18738
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150372e-40AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020219742.11e-163transcription factor MYB114
SwissprotQ9FNV92e-54MY113_ARATH; Transcription factor MYB113
TrEMBLA0A151TCA11e-161A0A151TCA1_CAJCA; Transcription factor MYB113 family
STRINGGLYMA09G36983.11e-111(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.18e-57myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]