PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_18743
Common NameKK1_019290
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 230aa    MW: 26511.1 Da    PI: 9.4678
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_18743genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-16956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++ Ed+ll+ +v+++G g W++++++ g++R++k+c++rw +yl
    C.cajan_18743  9 KGAWSKCEDDLLKACVQRYGEGKWHLVPQRAGLNRCRKSCRLRWMNYL 56
                     79********************************************97 PP
2Myb_DNA-binding44.92.8e-1462106147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++ ++E +  ++++k+lG++ W++Ia +++ gRt +++k++w++y
    C.cajan_18743  62 RGNFGEDEVDMMIRLHKLLGNR-WSLIAGRLP-GRTSNDVKNYWNTY 106
                      899*******************.*********.************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.566456IPR017930Myb domain
SuperFamilySSF466891.52E-276103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-21658IPR009057Homeodomain-like
SMARTSM007176.1E-13858IPR001005SANT/Myb domain
PfamPF002495.0E-15956IPR001005SANT/Myb domain
CDDcd001672.11E-81156No hitNo description
PROSITE profilePS5129423.05957111IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2259110IPR009057Homeodomain-like
SMARTSM007173.0E-1361109IPR001005SANT/Myb domain
PfamPF002491.1E-1262106IPR001005SANT/Myb domain
CDDcd001673.61E-864107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEALSGVRKG AWSKCEDDLL KACVQRYGEG KWHLVPQRAG LNRCRKSCRL RWMNYLKPNI  60
KRGNFGEDEV DMMIRLHKLL GNRWSLIAGR LPGRTSNDVK NYWNTYIRRK ELSHTKEKNV  120
KQKEVETKVK SHEVIRPVPQ TLSKTSPWLR GKFINSSKVG VSEAGADSLG SENWWKTLLD  180
DKEDNARNSN TCFFGVEDGA LDFWTQELTS IDCDFLAEGG INWSDFLLRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2491107107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_18743
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9342802e-40AB934280.1 Glycine max gene for MYB transcription factor, complete cds, allele: R, cultivar: Clark.
GenBankAB9342812e-40AB934281.1 Glycine max gene for MYB transcription factor, complete cds, allele: r-m.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020219743.11e-170transcription factor MYB114
SwissprotQ9FNV93e-56MY113_ARATH; Transcription factor MYB113
TrEMBLA0A151TCC81e-169A0A151TCC8_CAJCA; Transcription factor MYB113 family
STRINGGLYMA09G36983.11e-118(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-58myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]