PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_18927

Common Name

KK1_019478

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

WOX

Protein Properties

Length: 215aa MW: 24670 Da PI: 5.6443

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_18927	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.9	1.3e-21	77	137	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +p++++++e++ +l +++e++V++WFqNrRa+ k+ C.cajan_18927 77 RQRWTPTPLQLQILERIFDEgNGTPTKQKIKEITIQLgqhgQISETNVYNWFQNRRARSKR 137 89***************99************************************97 PP
2	Wus_type_Homeobox	99.8	2e-32	76	139	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it +L ++G+i+++NV++WFQNr+aR+++kq C.cajan_18927 76 ARQRWTPTPLQLQILERIFDEGNGTPTKQKIKEITIQLGQHGQISETNVYNWFQNRRARSKRKQ 139 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.4E-17	73	139	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.9	73	138	IPR001356	Homeobox domain
SMART	SM00389	3.4E-15	75	142	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.24E-18	76	139	IPR009057	Homeodomain-like
Pfam	PF00046	2.4E-19	77	137	IPR001356	Homeobox domain
CDD	cd00086	3.51E-15	77	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MEGEHLEEVS NSLYVKVMTD EQMELLRQQI SVYATICEQL VEMHKAVTTQ QDLAGLRLGN 60 LYCDPMMACS GHKITARQRW TPTPLQLQIL ERIFDEGNGT PTKQKIKEIT IQLGQHGQIS 120 ETNVYNWFQN RRARSKRKQL APAPNLVEPE PEPEPEPEVD SPKDKKTRPE TPHLQPYDSS 180 SPHRIKDMYI QSPDIGFDQL MAKIEVAGCY SSYFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	138	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_18927

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	3e-85	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027356059.1	1e-131	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-76	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A151TCZ1	1e-160	A0A151TCZ1_CAJCA; WUSCHEL-related homeobox 8
STRING	GLYMA04G01830.1	1e-129	(Glycine max)
STRING	XP_007136031.1	1e-129	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	7e-72	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]