PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_18981
Common NameKK1_019533
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family SRS
Protein Properties Length: 212aa    MW: 23694.3 Da    PI: 7.9161
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_18981genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70290.83.1e-281778566
         DUF702  5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaas 66
                   +++CqdCGnqakk+C+++RCRtCCk++gf+C+th+kstW pa+krr++ ++ +  + ++  +
  C.cajan_18981 17 GSKCQDCGNQAKKECSYSRCRTCCKNKGFQCQTHIKSTWTPADKRRHKDKEPHHFQGHNIPQ 78
                   569********************************************988777666555444 PP
2DUF70276.19.7e-2490143102155
         DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155
                      ++P+  +s+a+frcv+v+s+dd+ +e+aYqt v+igGhvf+G+LydqG++++
  C.cajan_18981  90 ELKFPAATNSMAIFRCVQVRSMDDAVNEIAYQTCVNIGGHVFRGLLYDQGPDDQ 143
                    335************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.9E-4317141IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.3E-241961IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.5E-2192140IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRRATQGEEE EEVVLRGSKC QDCGNQAKKE CSYSRCRTCC KNKGFQCQTH IKSTWTPADK  60
RRHKDKEPHH FQGHNIPQNH NQINPCSGLE LKFPAATNSM AIFRCVQVRS MDDAVNEIAY  120
QTCVNIGGHV FRGLLYDQGP DDQSYNNNNR GESSMGLVGQ QQNLGVVNNS SINTRDSSGA  180
SATMVSSGHD ETLLTSPPYP FPLMPYFSYP RS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_18981
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020219770.11e-161protein SHI RELATED SEQUENCE 3
SwissprotQ9SJT82e-43SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBLA0A151TCX71e-160A0A151TCX7_CAJCA; Uncharacterized protein
STRINGXP_007135936.11e-93(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99692541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21400.18e-46SHI-related sequence3