PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_19071

Common Name

KK1_019624

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NF-YC

Protein Properties

Length: 115aa MW: 12704.5 Da PI: 4.0876

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_19071	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	89.4	3.6e-28	1	70	30	99
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +k+d++v+misae+P+l+skace+fi elt r+w++aee++ +t++ +d+a+a+ +t+ +fl++ivp++ C.cajan_19071 1 MKTDPEVQMISAETPILMSKACEIFIQELTYRAWMRAEESNNQTVQPCDVAKAIVQTNAMNFLTEIVPNE 70 9*******************************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.12E-20	1	69	IPR009072	Histone-fold
Pfam	PF00808	2.7E-12	1	54	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.0E-23	1	68	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MKTDPEVQMI SAETPILMSK ACEIFIQELT YRAWMRAEES NNQTVQPCDV AKAIVQTNAM 60 NFLTEIVPNE LLHFCALDAQ EENAGNIAEG NQAAMPYTAG FMGNPMMNMG NVSVK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_C	3e-22	1	69	51	119	HapE
4g92_C	3e-22	1	69	51	119	HapE
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_19071

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020219998.1	5e-75	nuclear transcription factor Y subunit gamma isoform X1
Refseq	XP_020219999.1	6e-75	nuclear transcription factor Y subunit gamma isoform X2
Refseq	XP_020220000.1	6e-75	nuclear transcription factor Y subunit gamma isoform X3
Refseq	XP_020220002.1	6e-75	nuclear transcription factor Y subunit gamma isoform X4
Refseq	XP_020220003.1	3e-75	nuclear transcription factor Y subunit gamma isoform X5
TrEMBL	A0A151TD75	7e-80	A0A151TD75_CAJCA; Nuclear transcription factor Y subunit C-4
STRING	GLYMA02G09867.1	5e-49	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18213	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	1e-23	nuclear factor Y, subunit C4