PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_19569

Common Name

KK1_020142

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

bHLH

Protein Properties

Length: 318aa MW: 35542.3 Da PI: 9.9737

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_19569	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.1	8.8e-10	232	274	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq C.cajan_19569 232 AAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 274 569*****************5.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.9E-12	223	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.281	224	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-13	224	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.04E-10	226	278	No hit	No description
SMART	SM00353	1.0E-11	230	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.6E-7	234	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016787	Molecular Function	hydrolase activity
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MALAKDRKIP HDSSMSSKVQ KTIFSKYHKS VLEEEDGSQT VNGLSNDSAV SVTHSPPICV 60 SGKGNAYKGK NYQLEDKESL IHFKGYSNMM QAGESLLSFQ YLKDSSLKEY CVWENNLHQG 120 HTHNHWIQTS PRSPRDMRMV QDLNCFQTAS GYSSIADKAK EKQRGQSSSG WLYSAPTIPN 180 DSSLHKLGAQ ESVLQKRPSM GVNMKAAKKQ CTTESIKPKH KTSPSKDPQS VAAKNRRERI 240 SERLKILQEL VPNGSKVDLV TMLEKAISYV KFLQLQVKVL ATDEFWPVQG GKPPDISQVK 300 EAIDAILSSQ RERRSSST

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_19569

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	7e-41	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020204230.1	0.0	putative transcription factor bHLH086
Swissprot	Q9FJ00	5e-62	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	A0A151U9D7	0.0	A0A151U9D7_CAJCA; Putative transcription factor bHLH086
STRING	GLYMA18G04420.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4937	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	2e-64	RHD SIX-LIKE 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]