PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_19921

Common Name

KK1_020508

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

LSD

Protein Properties

Length: 112aa MW: 12163 Da PI: 7.6007

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_19921	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	48	2e-15	44	68	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYPrGA++V+C++C+tV C.cajan_19921 44 CGSCRRLLSYPRGAKHVKCSCCQTV 68 ************************9 PP
2	zf-LSD1	42.2	1.4e-13	82	106	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GA+ VRC++C +V C.cajan_19921 82 CGSCAVLLMYPYGASQVRCSSCRFV 106 **********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	7.0E-19	41	71	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.2E-12	44	68	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	7.3E-12	79	107	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.4E-11	82	106	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MHSQQTEKEE DDEGPPPGWQ PIPTHPPPPP PPPPRPSGWA QMVCGSCRRL LSYPRGAKHV 60 KCSCCQTVNI VLEGDQVGQV KCGSCAVLLM YPYGASQVRC SSCRFVTEIG VC

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_19921

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020213031.1	3e-75	protein LOL2
Swissprot	O65426	2e-35	LOL2_ARATH; Protein LOL2
TrEMBL	A0A151UAD0	3e-75	A0A151UAD0_CAJCA; Uncharacterized protein
STRING	XP_007159388.1	1e-57	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13026	31	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-35	lsd one like 2