PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_19934
Common NameKK1_020521
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NF-YA
Protein Properties Length: 228aa    MW: 25193.1 Da    PI: 6.0191
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_19934genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA49.31.6e-15175209136
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 
                    +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +ksrk
  C.cajan_19934 175 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKSRK 209
                    69****************************.88887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.4E-8173220IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115217.558174209IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.3E-12176209IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860179199IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MQSKSETANR LRSDPHTFQS GGVYSEPWWR GIGYNPLAQT MAGANASNSS SLECPNGDSE  60
SNEEGQSLSN SGMNEEDDDA TKDSQPAAPN EPGNYGQEQQ GMQHTASSAP SMREECLTQA  120
PQLELVGHSI ACATNPYQDP YYGGMMAAYG HQQMGYAPFI GMPHARMPLP LEMAQEPVYV  180
NAKQYQGILR RRQARAKAEL EKKLIKSRKV KCIRAIFNLS AYLFFFLL
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_19934
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217843.11e-155nuclear transcription factor Y subunit A-1, partial
RefseqXP_020234010.11e-155nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_020234081.11e-155nuclear transcription factor Y subunit A-1 isoform X2
SwissprotQ9LXV56e-62NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A151UAM11e-170A0A151UAM1_CAJCA; Nuclear transcription factor Y subunit A-1
STRINGGLYMA18G07890.21e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.44e-66nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]