PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_19939

Common Name

Dof15, Dof27, KK1_020540

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

Dof

Protein Properties

Length: 245aa MW: 25906.9 Da PI: 11.0271

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_19939	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	99.2	2.7e-31	1	48	14	61
zf-Dof 14 tntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +ntkfCy+nnyslsqPr+fCk+C+ryWt+GG++rn+PvGgg+rk k++ C.cajan_19939 1 MNTKFCYFNNYSLSQPRHFCKTCKRYWTHGGTFRNIPVGGGSRKGKRA 48 69******************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.1E-26	1	47	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	24.26	1	47	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-18	2	47	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MNTKFCYFNN YSLSQPRHFC KTCKRYWTHG GTFRNIPVGG GSRKGKRART SAFSNALSLT 60 QAQPNLLRPS PSPPTMLHSA SSFYQLAGAG VGVGVGVGGS GFLSSLATLH SLNSSRPFNH 120 HYLKVGVAGD VAGSSSNSSL LSGFNAASNS LPPRFHHMGR VESLYPTQQR LVIPSNVGAS 180 ATGSHTTQLP QSLIVSNNNA TNASLWSTTT ITANGNNSDQ NNVKAGGSSL IPNHWLHLPG 240 YAPPQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_19939

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP662918	0.0	KP662918.1 Cajanus cajan Dof27 (Dof27) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020217878.1	1e-175	uncharacterized protein LOC109801261
Refseq	XP_020220033.1	1e-178	dof zinc finger protein DOF2.2
TrEMBL	A0A0K8K646	1e-177	A0A0K8K646_CAJCA; Dof protein
STRING	GLYMA07G31860.2	3e-77	(Glycine max)
STRING	XP_007159342.1	2e-77	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	3e-25	OBF-binding protein 3

Publications ? help Back to Top
Malviya N, et al. Genome wide in silico characterization of Dof gene families of pigeonpea (Cajanus cajan (L) Millsp.). Mol. Biol. Rep., 2015. 42(2): p. 535-52 [PMID:25344821]