PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_20240
Common NameKK1_020841
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 444aa    MW: 49142.3 Da    PI: 6.2749
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_20240genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.23e-16130175147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
    C.cajan_20240 130 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 175
                      899*****************************.***********996 PP
2Myb_DNA-binding55.51.3e-17182225146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
    C.cajan_20240 182 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 225
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.17125176IPR017930Myb domain
SMARTSM007172.9E-14129178IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-28130223IPR009057Homeodomain-like
PfamPF002499.3E-16130175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-25131183IPR009057Homeodomain-like
CDDcd001673.43E-13133174No hitNo description
PROSITE profilePS5129426.929177231IPR017930Myb domain
SMARTSM007171.8E-14181229IPR001005SANT/Myb domain
PfamPF002492.6E-14182224IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-20184230IPR009057Homeodomain-like
CDDcd001671.04E-11184224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MKAWPASAVY SSQENTSSYS SSSPPMGMVY ADMDSLSLCS NYGVVSSHQD CYVSNGGTNW  60
GLPFVRECLG RNFEEHPNSD GVEEGKGSDS SDDAGGEDSE KVNHNANNFS EENPNENSLT  120
GSGHSKLCAR GHWRPAEDSK LKELVALYGP QNWNLIAEKL EGRSGKSCRL RWFNQLDPRI  180
NRRAFSEEEE ERLMQAHRIY GNKWAMIARL FPGRTDNAVK NHWHVIMARK YREQSSAYRR  240
RRLSQSVYRR VEENTESSIV SRDIATAGTE PPPPPYCLNL PNVALANSNM TSFPYAAAPF  300
HGVVAPNGGV EFGLNAAKEA ISTTKLAPPH IALYPQQTPL DFISGVRSND YFGQNRCWER  360
PSDAAPHQQP SGFYPHYPQY VMLMQQQQNC NHNNFYGLSN STAQILGSEA SLSAVAEHRD  420
GAVSSDPPDA IPPPFIDFLG VGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-331302307107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237242YRRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_20240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-157AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020215407.10.0transcription factor CSA
TrEMBLA0A151UBA60.0A0A151UBA6_CAJCA; Transcription factor MYB44
STRINGXP_007158647.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.16e-72myb domain protein 105