PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_20399
Common NameKK1_021005
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family TALE
Protein Properties Length: 528aa    MW: 59035.1 Da    PI: 7.7269
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_20399genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-093253621954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  C.cajan_20399 325 FEHflHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVR 362
                    554459******************************88 PP
2BELL1024.5e-33199265672
           BELL   6 qkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +kk++Ll++l+eV++rY+qy++q+++v+ sFe v gl +a+pY+slA ka+S+hFrcLk+ai++q+
  C.cajan_20399 199 GRKKSRLLTMLDEVYRRYRQYYQQMHAVVTSFEYVSGLSNAAPYASLAIKAMSKHFRCLKNAITDQL 265
                    68**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.8E-44137263IPR006563POX domain
PfamPF075263.1E-37142262IPR006563POX domain
PROSITE profilePS5007112.098303366IPR001356Homeobox domain
CDDcd000861.47E-12306367No hitNo description
SMARTSM003893.4E-10306370IPR001356Homeobox domain
SuperFamilySSF466894.06E-17308373IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.7E-28309370IPR009057Homeodomain-like
PfamPF059209.1E-19323362IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MAEGFEAYHV PQQSRRDKLR VVATQNQHGL VEPSTLLPLY DPSSFISSDL LTSFHNNQKH  60
NLGCATIQVI NNNNNNSSSN NMFLYQAQNL REFDQGYNNN NTNNSEIMVF KPEPLSLSLS  120
SHNNNISRGT VPMGPFTGYA SILKGSRFLK PAQQLLEELC DVGGVCAEKM VADASLMEPI  180
PPPESSSEDP LGDHGGDQGR KKSRLLTMLD EVYRRYRQYY QQMHAVVTSF EYVSGLSNAA  240
PYASLAIKAM SKHFRCLKNA ITDQLQFANK AHFHISNRKD ESPRFGNSDR GPYSQRPGFL  300
EHQPVWRPQR GLPERAVTVL RAWLFEHFLH PYPTDTDKLM LAKQTGLSRS QVSNWFINAR  360
VRLWKPMVEE IHMLETRQAQ KNPQKEEHCR NKSSDHLPSD NSIVSENPSS STDKFQEAPY  420
KRAINEVPNI PVRTQEQLNL PCTSNQAGGG VGVSMGGGSA SNSVSLTLGL YQNHGIGLAE  480
PFPLNAAQRF GVGLETNNEG YVMSGYESQN RHFGRDLIGG QLLHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15312370563Homeobox protein Meis2
3k2a_B1e-15312370563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_20399
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0953250.0BT095325.1 Soybean clone JCVI-FLGm-19C14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020216724.10.0BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-122BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A151UBU20.0A0A151UBU2_CAJCA; BEL1-like homeodomain protein 9
STRINGGLYMA01G25710.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-104TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]