PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_20464

Common Name

KK1_021074

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

bZIP

Protein Properties

Length: 352aa MW: 39922.1 Da PI: 7.4603

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_20464	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.8	4.6e-08	221	267	17	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 A+rsR RK+++i+eLe+ v++L+ae ++ ele l+++ l +e+ C.cajan_20464 221 AQRSRVRKLQYIAELERNVQALQAEGSEVSAELEFLNQQNLILNMEN 267 89************************************998888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.0E-4	210	269	IPR004827	Basic-leucine zipper domain
CDD	cd14703	8.84E-16	212	260	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.6E-8	221	263	No hit	No description
SuperFamily	SSF57959	6.19E-6	221	263	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MANSKGSSGV RNFMYSGKHA LLPPKSPFPS VSQAYSDYVP NSAVGLKAGN RPREGNSHHQ 60 RTSSESLVIE EQPSWLDDLL NEPETPIRRG GHRRSSSDSF AYIDAVNASN INYADQDEYK 120 YKNLMSIPSW TSQDFDHSKD ARHIPVYPEM NLAKLKNRSW DSFSNVMTNP VDGVPQTAIE 180 KHDSVESGLQ DAKSFSEKKD SSHGKPSASE TDTKRAKQQF AQRSRVRKLQ YIAELERNVQ 240 ALQAEGSEVS AELEFLNQQN LILNMENKAL KQRLESIAQE QLIKYLEQEV LEREIGRLRS 300 LYQQQQQQQQ HPQQQPSGSH RRSNSRDLES QFAILSLKHK DTDSGQDPAL RI

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MANSKGSSGV RNFMYSGKHA LLPPKSPFPS VSQAYSDYVP NSAVGLKAGN RPREGNSHHQ  60
RTSSESLVIE EQPSWLDDLL NEPETPIRRG GHRRSSSDSF AYIDAVNASN INYADQDEYK  120
YKNLMSIPSW TSQDFDHSKD ARHIPVYPEM NLAKLKNRSW DSFSNVMTNP VDGVPQTAIE  180
KHDSVESGLQ DAKSFSEKKD SSHGKPSASE TDTKRAKQQF AQRSRVRKLQ YIAELERNVQ  240
ALQAEGSEVS AELEFLNQQN LILNMENKAL KQRLESIAQE QLIKYLEQEV LEREIGRLRS  300
LYQQQQQQQQ HPQQQPSGSH RRSNSRDLES QFAILSLKHK DTDSGQDPAL RI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_20464

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235304	0.0	AC235304.1 Glycine max strain Williams 82 clone GM_WBb0065N07, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020212694.1	0.0	uncharacterized protein At4g06598 isoform X2
Swissprot	Q8W3M7	2e-67	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	A0A151UBW9	0.0	A0A151UBW9_CAJCA; Putative membrane protein At4g06598
STRING	GLYMA05G30170.3	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5123	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	1e-107	bZIP family protein

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315]