PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_20987

Common Name

KK1_021616

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

MYB

Protein Properties

Length: 345aa MW: 38811.6 Da PI: 6.2377

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_20987	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.8	2.9e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lvd+++++G g+W++ ++ g++R++k+c++rw +yl C.cajan_20987 14 KGPWTPEEDRILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	57.1	4e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++l++++++ lG++ W++Ia +++ gRt++++k++w+++l C.cajan_20987 67 RGKFSEEEEQLIINLHAVLGNK-WSSIAGHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.612	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.48E-32	11	108	IPR009057	Homeodomain-like
SMART	SM00717	7.5E-16	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-17	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-25	15	68	IPR009057	Homeodomain-like
CDD	cd00167	3.14E-12	16	61	No hit	No description
PROSITE profile	PS51294	28.173	62	116	IPR017930	Myb domain
SMART	SM00717	4.8E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	9.2E-17	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.5E-28	69	117	IPR009057	Homeodomain-like
CDD	cd00167	1.18E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MGRTAWGDES GLKKGPWTPE EDRILVDYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SEEEEQLIIN LHAVLGNKWS SIAGHLPGRT DNEIKNFWNT HLKKKLMQMG 120 LDPVTHRPRS DHLNLLSNLQ QLLAATNIFS NFTNTWDINA LSMQSDATQL AKLQLLQNIL 180 QVLGANPTSN MELLNPFGPP SSLQDGFLNE VLGLNQSKLQ DLCNGFPSQN QPNFQNFEAP 240 PHQQQTLPSG FQHMSGCRNS SCMKSEKVEE QLDAPISSSS STQLFNSLPN LVSASPECST 300 VKQMENKGNT NECSDPCNST STTFEMWGDF MYEEVSEAYW KDLLE

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MGRTAWGDES GLKKGPWTPE EDRILVDYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEEEEQLIIN LHAVLGNKWS SIAGHLPGRT DNEIKNFWNT HLKKKLMQMG  120
LDPVTHRPRS DHLNLLSNLQ QLLAATNIFS NFTNTWDINA LSMQSDATQL AKLQLLQNIL  180
QVLGANPTSN MELLNPFGPP SSLQDGFLNE VLGLNQSKLQ DLCNGFPSQN QPNFQNFEAP  240
PHQQQTLPSG FQHMSGCRNS SCMKSEKVEE QLDAPISSSS STQLFNSLPN LVSASPECST  300
VKQMENKGNT NECSDPCNST STTFEMWGDF MYEEVSEAYW KDLLE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-29	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_20987

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB108651	0.0	AB108651.1 Glycine max MYB101 mRNA for transcription factor MYB101, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020214032.1	0.0	transcription factor MYB53 isoform X1
Swissprot	Q9S9Z2	2e-85	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A151TLU5	0.0	A0A151TLU5_CAJCA; Transcription factor MYB39
STRING	GLYMA12G01960.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF402	34	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	6e-94	myb domain protein 9

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]