PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_21133
Common NameKK1_021762
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 365aa    MW: 40186.3 Da    PI: 7.4997
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_21133genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.11.9e-10325427
                   ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                    +Cr+f+r G C+yG+rC++ H++
  C.cajan_21133  3 DICRNFQR-GSCQYGERCRYLHVQ 25
                   69******.*************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-4125IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-8225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-7328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MRDICRNFQR GSCQYGERCR YLHVQQQRKP NAHGFGGQNS SHQQQNTNPF GFGSHSGSGF  60
GSQQQQKTNN PFGFGTHNSS QLNGGNQFKP FENKWSRQSS KPQNGVSRQS NNNSQQVDHK  120
CTDPENCKRQ IAEDLGQEKP IWILTCYAHC KGAPCDIVGD ISYEELRASA YEDAKNGMSL  180
PSIVEKERNI LKSKLVDFEK LLSEPYKMPI NSSLDHQKHQ TVGANANPFS ITSQNNGPLS  240
VSSFSQLGTS LNMGFERPSA PPTNTLAQPS FFGSGVNLGS SGVFGAQSIP YSAPVESTMF  300
PGSTQQTSVA FNNSGATTMF QTTPDVQLSN KLKVENVPGE FTIWMQETWN PGEIPEEAPP  360
DAYIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_21133
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020214100.10.0zinc finger CCCH domain-containing protein 46
TrEMBLA0A151TM680.0A0A151TM68_CAJCA; Zinc finger CCCH domain-containing protein 46
STRINGXP_007131504.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46002333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.21e-67C3H family protein