PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_21152
Common NameKK1_021781
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 236aa    MW: 27726 Da    PI: 6.8709
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_21152genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.8e-17855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT++Ed +lv  v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
    C.cajan_21152  8 RGPWTEQEDFKLVYFVTMFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 55
                     89********************************************97 PP
2Myb_DNA-binding53.17.4e-1761106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++E++l  +++ ++G++ W++Iar+++ gRt++++k++w++++
    C.cajan_21152  61 RGKLTPQEEKLVMELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106
                      8999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.683355IPR017930Myb domain
SuperFamilySSF466891.61E-295102IPR009057Homeodomain-like
SMARTSM007171.7E-14757IPR001005SANT/Myb domain
PfamPF002491.1E-14855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-20962IPR009057Homeodomain-like
CDDcd001671.40E-91055No hitNo description
PROSITE profilePS5129427.16356110IPR017930Myb domain
SMARTSM007176.5E-1560108IPR001005SANT/Myb domain
PfamPF002492.4E-1561105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2463109IPR009057Homeodomain-like
CDDcd001675.26E-1065106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVQQEIRRGP WTEQEDFKLV YFVTMFGDRR WDFIAKVSGL NRTGKSCRLR WVNYLHPDLK  60
RGKLTPQEEK LVMELHSKWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKK AQEKKRAASL  120
ASRVSSSCQS SLSSNNHVVD SHASKEAGEE IGEKGYTMDD IWNDIVESEE NIYNLQPVYD  180
GHSEEGCNFS CPPPMPSPSW DEYNSHPLWV MDEEESNKML FPDQYFPCYD QGNAYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2851091104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_21152
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0972741e-103BT097274.1 Soybean clone JCVI-FLGm-21F20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025980194.11e-118transcription factor MYB59
RefseqXP_028191333.11e-118transcription factor MYB59-like
SwissprotQ4JL849e-83MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A151TM871e-178A0A151TM87_CAJCA; Transcription factor MYB59
STRINGGLYMA11G15180.61e-118(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-76myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]