PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_21249

Common Name

KK1_021878

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

SRS

Protein Properties

Length: 211aa MW: 23799.9 Da PI: 8.4072

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_21249	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	158.4	4.6e-49	9	140	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 +g+++CqdCGnqakkdC+++RCRtCCk++gf+C+th++stW+p+++rr++ +q+ ++++ + +kr++++ + s C.cajan_21249 9 KGSSKCQDCGNQAKKDCSYSRCRTCCKNKGFNCQTHIRSTWIPVDRRRHKVEQQPLPTTNLL---GDIIPKRHKHN---TFS-------------- 84 57899*******************************************998888755543...45566666643...222.............. PP DUF702 99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +le ++P+ +ss+a+f+cv+v+s+dd +e+aYqt+v+igG vf+G+LydqG+e+ C.cajan_21249 85 SLEEFRFPAIMSSTALFSCVQVRSMDDTVNEIAYQTSVNIGGRVFSGLLYDQGPEQ 140 344556**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.7E-44	11	139	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.3E-25	13	55	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.1E-18	90	138	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MMLGEEAVKG SSKCQDCGNQ AKKDCSYSRC RTCCKNKGFN CQTHIRSTWI PVDRRRHKVE 60 QQPLPTTNLL GDIIPKRHKH NTFSSLEEFR FPAIMSSTAL FSCVQVRSMD DTVNEIAYQT 120 SVNIGGRVFS GLLYDQGPEQ SFNARGNNMS IDPFDQQHDL NLRSASIHTR DGATMPPLST 180 TTTQELLFPP PQPFPLASFR PDMTYLPHQK S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_21249

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029127125.1	1e-159	protein SHI RELATED SEQUENCE 3-like
Swissprot	Q9SD40	8e-42	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A151TMJ9	1e-158	A0A151TMJ9_CAJCA; Uncharacterized protein
STRING	XP_007131783.1	1e-110	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9969	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	8e-44	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]