PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_21481
Common NameKK1_022115
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ARF
Protein Properties Length: 740aa    MW: 81712.9 Da    PI: 6.1863
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_21481genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.2e-24164265199
                    EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                    f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + +++
  C.cajan_21481 164 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGENG 256
                    99****************************963.3445679************************************************..44999 PP

                    ..EEEEE-S CS
             B3  91 elvvkvfrk 99 
                    el+++++r+
  C.cajan_21481 257 ELRLGIRRA 265
                    99****996 PP
2Auxin_resp114.11.2e-37290372182
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                    +a+a+stks F+v+Y+Pras+++Fvv+++k++k+++++vs+G+Rfk+++e+++s+err+ sGt +g+sdldp+rWp+SkWr+L
  C.cajan_21481 290 VANAISTKSKFHVFYSPRASHADFVVPYQKYVKSINNPVSIGTRFKIRLEMDESQERRCsSGTLIGTSDLDPYRWPKSKWRCL 372
                    689********************************************************9**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-41155276IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-44156274IPR015300DNA-binding pseudobarrel domain
CDDcd100173.95E-23162264No hitNo description
SMARTSM010191.5E-24164266IPR003340B3 DNA binding domain
PfamPF023624.3E-22164265IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084164266IPR003340B3 DNA binding domain
PfamPF065074.1E-32290372IPR010525Auxin response factor
PfamPF023093.3E-6607697IPR033389AUX/IAA domain
PROSITE profilePS5174521.863612696IPR000270PB1 domain
SuperFamilySSF542774.61E-10615691No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MEIDLNHEVT EVENNALCDG ECEKGGGAGG WSSSTCSSSS SSSAHVSSSY LELWHACAGP  60
LTSLPRKGNV VVYFPQGHLE QVASFSPFTP MEIPTYDLHP QIFCRVVNVQ LLANKENDEV  120
YTQVTLLPQA ELEGMHSEGK ELEELGAEEE GDERSPTKST PHMFCKTLTA SDTSTHGGFS  180
VPRRAAEDCF PPLDYKQQRP SQELVAKDLH GVEWKFRHIY RGQPRRHLLT TGWSIFVSQK  240
NLVSGDAVLF LRGENGELRL GIRRAVRPRN ELPESIIGSQ NCYPNVLSSV ANAISTKSKF  300
HVFYSPRASH ADFVVPYQKY VKSINNPVSI GTRFKIRLEM DESQERRCSS GTLIGTSDLD  360
PYRWPKSKWR CLMVRWDEDI ETNHQDRVSP WEIDPSAPLP PLSIQSSPRL KKLRTGLQVA  420
SPSHLITARG SGLVGFEESV RSPKVLQGQE NAGFVSLYYG CQEICQLKSL TGNVDLNLGA  480
WGMPNLSCST FNLHQATKPN FQSALFPYGD IHQPGQTSLF CSKPTGFQRE NAPFNKPPTQ  540
GGIIVNEVGR SDLPNEHKLQ DNISAAAASL GAPNMGVPSD NNAQGKVNGC KLFGFHLSGE  600
AATQNLPNSA KRSCTKVHKQ GSLVGRAIDL SRLSGYNDLL SELERLFGME GLLKDPDKGW  660
RILYTDSEND IMVVGDDPWH EFCDVVSKIH IYTQEEVEKM TIGMISDDTH SCLEEAPVIM  720
EASKSSSVGQ PDYSPTAVRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1205239522354Auxin response factor 1
4ldw_A1e-1205239522354Auxin response factor 1
4ldw_B1e-1205239522354Auxin response factor 1
4ldx_A1e-1205239522354Auxin response factor 1
4ldx_B1e-1205239522354Auxin response factor 1
4ldy_A1e-1205239522354Auxin response factor 1
4ldy_B1e-1205239522354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_21481
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020214932.10.0auxin response factor 4 isoform X2
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A151TN670.0A0A151TN67_CAJCA; Auxin response factor
STRINGGLYMA12G07560.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52363252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]