PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_21533
Common NameKK1_022168
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ARF
Protein Properties Length: 683aa    MW: 75470.6 Da    PI: 7.8111
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_21533genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.62.8e-24103206199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+lt+sd+++ g +++p+ +ae++        ++++  +t++ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD+vvF   + ++
  C.cajan_21533 103 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPPPVQTVVAKDVHGEMWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFL--RAEN 196
                    89******************************9555556679************************************************..4499 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    +el+v+++r+
  C.cajan_21533 197 GELCVGIRRA 206
                    99******97 PP
2Auxin_resp115.54.8e-38266348283
     Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                    ++ a+++++FevvY+Prast+eF++k+++v++a+++++s GmRfkmafetedss++++ +Gt+++v+ ldp+rWpnS+Wr+L+
  C.cajan_21533 266 STLAASNKPFEVVYYPRASTPEFCIKASSVRAAMRIQWSSGMRFKMAFETEDSSRISWfMGTIASVQVLDPIRWPNSPWRLLQ 348
                    678999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-3696210IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-28100207IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-22102205No hitNo description
SMARTSM010192.3E-23103207IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084103207IPR003340B3 DNA binding domain
PfamPF023622.0E-22103206IPR003340B3 DNA binding domain
PfamPF065073.1E-33265348IPR010525Auxin response factor
PROSITE profilePS5174518.016571663IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MKEAEKLLDP QLWHACAGGI IQMPQLNSKV FYFPQGHAEH AHTTLDLKVP PLIPCTVAAV  60
KFMADPETDE VFAKLSLLPN SDLARDSGAA DSAPEAAEKP ASFAKTLTQS DANNGGGFSV  120
PRYCAETIFP RLDYTAEPPP PVQTVVAKDV HGEMWKFRHI YRGTPRRHLL TTGWSSFVNQ  180
KKLVAGDSVV FLRAENGELC VGIRRAKKGI GGSEACSSVW SSASGSGNCG IGPYGPFSFF  240
LREENKHLRN GGGRVRVSPE AVVEASTLAA SNKPFEVVYY PRASTPEFCI KASSVRAAMR  300
IQWSSGMRFK MAFETEDSSR ISWFMGTIAS VQVLDPIRWP NSPWRLLQVT WDEPDLLQNV  360
KRVSPWLVEL VSNMPVINFT PFSPPRKKLR FPQHPDFPLD VQFPIPAFSG NHLGPNSPFS  420
DNAPASIQGA RHAQFGISLT DFHLNNKLQL GLLPTNIQQL ELYSGISNGN IANHDKSKEN  480
LSCLLTMGKS SKSLEKSDDV VKKHQFLLFG QPILTEQQIS SEVLSHRKNS LDDDKDKEKC  540
VLDDSQSALS QQFSPGKASA AEFSWHLGLD TGHCKVFLES EDVGRTLDLS HLGSYEELYR  600
RLANMFGIER SEILNHVLYR DATGAVKQTG EEPFSDFMKT AKRLTILTDS GNKNIKRVWI  660
TGTRNGEHGL DASNKTGPLS IYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-78736950388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_21533
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020215156.10.0auxin response factor 18 isoform X2
RefseqXP_029127182.10.0auxin response factor 18 isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A151TNB10.0A0A151TNB1_CAJCA; Auxin response factor
STRINGGLYMA12G08110.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]