PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_21573
Common NameKK1_022210
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 306aa    MW: 34697 Da    PI: 6.8308
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_21573genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.7e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
    C.cajan_21573 14 KGPWSPEEDTKLKEYIEKHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding378e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
    C.cajan_21573  69 GDFSDEEDRIICSLYVNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.731962IPR017930Myb domain
SuperFamilySSF466892.53E-2711109IPR009057Homeodomain-like
SMARTSM007175.5E-131364IPR001005SANT/Myb domain
PfamPF002492.3E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-251569IPR009057Homeodomain-like
CDDcd001674.71E-101662No hitNo description
PROSITE profilePS5129421.69663117IPR017930Myb domain
SMARTSM007171.0E-1067115IPR001005SANT/Myb domain
PfamPF002492.3E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDTKLKEYIE KHGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSDEEDRIIC SLYVNIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMSL  120
LPLSHHRKQA SFPSSILQNP PPSPSSHQLY GEYCTYTPMT TTSFPVTTEP LSLPSSNYAT  180
TTTSISHPFH QSQDSMASAI SPMQQCYYPI RDSMLMFGSE GSCSSSDGSC SQGREIKQEE  240
MGYQSYNDSN NLMLSCYSNM NDGGCFSETL TPLDCDLEEI KQLIRFNNVD DENKTEEKAM  300
YQYYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-26141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_21573
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0945870.0BT094587.1 Soybean clone JCVI-FLGm-18J14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020215039.10.0transcription factor RAX2
TrEMBLA0A151TNF20.0A0A151TNF2_CAJCA; Transcription factor RAX3
STRINGGLYMA12G08480.11e-160(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.18e-74myb domain protein 36