PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_21708

Common Name

KK1_022351

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NAC

Protein Properties

Length: 244aa MW: 27829.2 Da PI: 7.9537

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_21708	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	141.7	4.3e-44	5	139	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 ppGfrF Pt+eelv +yL+kk++g++ +++vi+ +di+ vePw+Lp+ ++++++++w+fF++ ++++a+g r++r+t+ gyWkatg+ C.cajan_21708 5 PPGFRFFPTEEELVGFYLQKKLQGQRnslaSAIDSVIPVIDINGVEPWNLPThageRCRGDTEQWFFFCPGQEREARGGRPSRTTACGYWKATGSP 100 8***********************66654445589999******9535665566788***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++++++g+kk++vfykg+ap g+kt+W m+eyr+ C.cajan_21708 101 GYVYSSHNRVIGMKKSMVFYKGKAPLGTKTEWKMNEYRA 139 ***********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-48	3	160	IPR003441	NAC domain
PROSITE profile	PS51005	46.783	4	162	IPR003441	NAC domain
Pfam	PF02365	4.8E-24	5	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MVDHPPGFRF FPTEEELVGF YLQKKLQGQR NSLASAIDSV IPVIDINGVE PWNLPTHAGE 60 RCRGDTEQWF FFCPGQEREA RGGRPSRTTA CGYWKATGSP GYVYSSHNRV IGMKKSMVFY 120 KGKAPLGTKT EWKMNEYRAI EFSNQSTPRL RREFSLCRVY VISGSFRAFD RRPLEREGAE 180 SQRIVAQQTA REDGSSSSQN SHLGGVYSLQ VAEGGDLVWN LNVNTEVQLQ QPLWEFEWEQ 240 FNSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	5e-35	5	160	21	166	NAC domain-containing protein 19
3swm_B	5e-35	5	160	21	166	NAC domain-containing protein 19
3swm_C	5e-35	5	160	21	166	NAC domain-containing protein 19
3swm_D	5e-35	5	160	21	166	NAC domain-containing protein 19
3swp_A	5e-35	5	160	21	166	NAC domain-containing protein 19
3swp_B	5e-35	5	160	21	166	NAC domain-containing protein 19
3swp_C	5e-35	5	160	21	166	NAC domain-containing protein 19
3swp_D	5e-35	5	160	21	166	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_21708

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020215143.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	8e-80	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A151TNW4	0.0	A0A151TNW4_CAJCA; NAC domain-containing protein 90
STRING	GLYMA11G18770.1	1e-122	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	1e-82	NAC domain containing protein 61

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]